Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01921 ATGGTTTTTCGGAGGAAACAAAGGGAATTAAAAAGGATATTGAATGAAAAACAGAATAAGAGTGAAAAGTTGCTGTTTTTATCGTTGATTTTACCTGGGAATGAAGATGAATACAATTCAGGGCAACCCCTCCCTCTGAGTCTCAGCTTCTTCCTCTCACTCGATTGCGTGAGATCCAATGCTAACACAGAGAGACAGACAAAGAGATCCGAGGAGTTTCACTTCGCTCTCTCTATCATCTTTCGCTTCTCTATTCCCTTATTCTACTACCAACCTTTCAGCGTTCAACCAGTGATGGCGGGTTTGGCTCCAGAAGGATCCAATTTTGATGGTCGTCAATATGATGCTAAGATGAATGAATTGCTTTCCACTGATGGGCAAGAATTCTTCACCTCATATGATGAAGTCCATGATAGCTTCGATGCAATGGGATTACAAGAAAATCTTCTGCGAGGCATATATGCTTATGGTTTTGAGAGGCCTTCTGCAATCCAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGTCTGGATGTGATTCAACAGGCTCAGTCTGGAACTGGAAAGACAGCAACATTCTGTTCTGGAATTCTGCAGCAGCTTGATTATGGATTGGTTCAGTGCCAGGCTTTGGTTTTGGCACCAACTAGGGAGCTAGCACAACAGATTGAGAAGGTTATGCGAGCTCTTGGTGACTACCTTGGTGTTAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTTCGTGAGGATCAGCGCATTCTCCAAGCTGGTGTCCATACTGTTGTCGGCACTCCTGGGCGTGTGTTTGACATGCTGCGGAGGCAATCTCTTCGCTCAGATTACATAAGGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCTCGTGGGTTCAAGGATCAGATTTATGACATCTTCCAGCTACTGCCAGCCAAAATTCAGGTTGGAGTGTTCTCTGCTACGATGCCACCCGAAGCCCTTGAGATTACAAGGAAGTTCATGAACAAGCCAGTGAGAATTCTTGTAAAGCGTGATGAACTGACCCTGGAGGGTATCAAGCAGTTCTACGTCAATGTTGATAAAGAAGAATGGAAGCTAGAGACATTATGCGACCTCTATGAGACTCTGGCTATCACACAGAGTGTCATTTTTGTGAATACCAGACGCAAGGTGGACTGGCTCACTGACAAGATGCGAAGCAATGATCACACAGTCTCAGCAACACATGGTGACATGGACCAAAACACAAGGGATATCATCATGAGAGAATTCAGGTCTGGCTCTTCTCGAGTTCTCATTACCACTGACCTTCTGGCCCGTGGTATAGATGTGCAGCAAGTGTCTCTGGTCATAAACTATGATCTCCCTACTCAACCTGAAAATTATCTTCACCGTATTGGTCGTAGTGGGCGTTTTGGAAGAAAAGGTGTTGCTATAAACTTTGTGACTTTGGATGATGCTAGAATGCTGTCTGATATTCAGAAGTTCTACAATGTGTCTGTAGAGGAGCTGCCATCAAATGTCGCTGATTTGCTCTGA 1536 0.444 MVFRRKQRELKRILNEKQNKSEKLLFLSLILPGNEDEYNSGQPLPLSLSFFLSLDCVRSNANTERQTKRSEEFHFALSIIFRFSIPLFYYQPFSVQPVMAGLAPEGSNFDGRQYDAKMNELLSTDGQEFFTSYDEVHDSFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHTVVGTPGRVFDMLRRQSLRSDYIRMFVLDEADEMLSRGFKDQIYDIFQLLPAKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDARMLSDIQKFYNVSVEELPSNVADLL* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01921 511 Gene3D - 128 346 IPR027417 -
Rops4g01921 511 Gene3D - 347 511 IPR027417 -
Rops4g01921 511 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 138 166 IPR014014 GO:0003724
Rops4g01921 511 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 134 495 - -
Rops4g01921 511 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 492 IPR027417 -
Rops4g01921 511 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 285 293 IPR000629 -
Rops4g01921 511 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 350 511 IPR001650 -
Rops4g01921 511 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 169 339 IPR014001 -
Rops4g01921 511 Pfam Helicase conserved C-terminal domain 364 472 IPR001650 -
Rops4g01921 511 CDD DEADc_EIF4A 142 340 - -
Rops4g01921 511 SMART helicmild6 391 472 IPR001650 -
Rops4g01921 511 SMART ultradead3 157 354 IPR014001 -
Rops4g01921 511 FunFam Eukaryotic initiation factor 4A-II 126 345 - -
Rops4g01921 511 Coils Coil 3 23 - -
Rops4g01921 511 CDD SF2_C_DEAD 351 481 - -
Rops4g01921 511 FunFam Eukaryotic initiation factor 4A-III 346 511 - -
Rops4g01921 511 Pfam DEAD/DEAH box helicase 163 324 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01921 Rops-Chr4 44549125 44554995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01921 99 511 Eukaryotic Initiation Factors Gene Family AT1G72730 88.406 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01921 K03257 - gmx:100809918 798.505
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01921 4 44549125 44554995 Rops4g01921 4 44549125 44554995 ECH
Rops7g00373 7 4811842 4814407 Rops4g01921 4 44549125 44554995 PCT