Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01919 ATGGGGAATCAGAAGCAGAAGTGGACGCAAGATGAAGAAGATGCTCTTATTGCTGGAGTTGAAAAGCATGGCCCTGGAAAGTGGAAGAACATTCTCAAAGATCCCCAATTTGCACCTTTTCTCACTTCTCGTTCCAACATCGACCTCAAGGATAAATGGCGAAATTTGAGTGTGAGTAATGGTACTCAAGGGTCTAAAGAAAAATCTAGGGTTCCCAAGCTCAAAGCTGCTGCTTCTGCTTCTACTCCTGCAGCTCCCAATGCCGCTGTTCAAAATGCTGCTGCTGTTGCTGCTGCTCATCCTCATCAAACCACACCTTCTGATGTTGCTGTCATTGATTCTTCTCAAAATGAACTAGATGTCAAAAATCCTCCAAGGTATAATGCCATGGTTTTTGAAGCTCTATCAGCACTAAAAGATACTAATGGATCTGACCTAAATGCCATTGTTAGTTTCATCGAGCAAAAGCATCAGGTTCCACAAAACTTCAGAAGGGCACTGGGCACAAGGTTGAGGAGGCTCGTTAGTCAAGGGAAGCTGGAAAAGGTACAAAATTGTTACAAGATAAAAAAGGAAGCCTCATCAACGACAAAATCACCTGCACCAAAACAAAAGGATGTCAAGCCACAACGGCAATCACCAGCCTCTGGTTTTATGGCATCTAATGAGACATTGAAGGAAGCCGCTGATAACGCAGCCTTAAGAGTTGCTGATGCTGAAAGCAAAACATATCTGGCAGCTGAGGCAGTCAAGGATGTGGAAAGAATCTCAGGGATAGCCGAAGATACTGATAGAATGTTACAGCTAGCAAAAGACATTTATGAACAATGTTCGCGTGGTGAAGTTATCCTCTGGGCTTAA 861 0.4355 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGTQGSKEKSRVPKLKAAASASTPAAPNAAVQNAAAVAAAHPHQTTPSDVAVIDSSQNELDVKNPPRYNAMVFEALSALKDTNGSDLNAIVSFIEQKHQVPQNFRRALGTRLRRLVSQGKLEKVQNCYKIKKEASSTTKSPAPKQKDVKPQRQSPASGFMASNETLKEAADNAALRVADAESKTYLAAEAVKDVERISGIAEDTDRMLQLAKDIYEQCSRGEVILWA* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01919 286 FunFam Telomere repeat-binding factor 1 2 58 - -
Rops4g01919 286 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 123 191 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops4g01919 286 FunFam Telomere repeat-binding factor 1 8 87 - -
Rops4g01919 286 Coils Coil 222 242 - -
Rops4g01919 286 PANTHER SINGLE MYB HISTONE 4 1 284 IPR044597 GO:0003691
Rops4g01919 286 CDD H15 125 209 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops4g01919 286 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Rops4g01919 286 Pfam linker histone H1 and H5 family 125 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops4g01919 286 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Rops4g01919 286 SMART h15plus2 121 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops4g01919 286 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Rops4g01919 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Rops4g01919 286 SMART sant 4 59 IPR001005 -
Rops4g01919 286 Gene3D - 121 212 IPR036388 -
Rops4g01919 286 MobiDBLite consensus disorder prediction 57 84 - -
Rops4g01919 286 CDD SANT_TRF 6 56 - -
Rops4g01919 286 MobiDBLite consensus disorder prediction 191 217 - -
Rops4g01919 286 SUPERFAMILY "Winged helix" DNA-binding domain 123 203 IPR036390 -
Rops4g01919 286 Gene3D - 8 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01919 Rops-Chr4 44536989 44544303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01919 1 286 Single Myb Histone (SMH) Gene Family AT1G72740 47.931 5.51e-82 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops4g01919 Linker_histone 4.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01919 K09422 - gmx:780537 396.356