Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01905 ATGCAAACTCCGGCAGGTGCACGCTCCACCGTCATCGCCATCAACGCTGACCGGAACAGCCAATACGCCGTCAAATGGGCGGTGGATCACCTTCTGAACAAGAACTCCTCTTGCATCCTCATTCATGTTCGTACCAAACCCATTCATCCCCATGATGTTGATCATGTCCCTAAACATGGTCGTCCACCAACTGAAGAAGAATTACACCAATTATTTCTTACCTTCCGAGGATTTTGTGCTCGAAGAGGGATCGTGGCTAAGGAGTTGGTGCTGCATGACATTGATGTTCCGAGTGCGTTTACTTATTATGTCGTTGAGAACTCTATTAGAAATATTGTTGTTGGTGCTTATGCTTCCCCCTGGAGTATTCTTATAAGGAGATTCAAAAATGAAGATGTGCCAACTAGCTTAGCAAAGTCTTTGCCAGAGTCTTGCACATTGCATGTTGTATCAAAAGGAAAAGTTCAAAATATCCGACCAACAGGTCATCCTCAGAATATTCAACCTCAGAATATTAACGTCCCACCAACAAGATCTATAAGAGACTTAGTCACTCTCTTGCAAAATGCTCCATTGGTTCATCCAAATCAGTTTCTTGTTGATACCCCTGATTCTGAAGATATAAACAGGAAACCATTCAAAGATGCCATAGGGCGAGAATCTAGCAATGTTTGGGGATCTATAGGTGACATAAAAGATGTCATACTAATTTCATCACGTAAATGCAATGAAGATACCAATTCACCAAGAGGTCCAAGACTATCAGTTGGAAGTTCCTCATCACAAACTTCATCAAATCGAAGTTCTCCTGCCAACAGTGATAGTTCAGGGAGACTTGGTCTTCATTTGCCTGATACGTTACATGGAAACCATGAAGTAGTGTTAAGCTCAGACAGCTCTGAGTGCATCCTTTCTTCAAAACCCCTAATAAGCTTGGAGACAGAAATAAAGAAATTAAAACTAGAACTAAAGAAAACAACGGAGCAGTATGGTATAGCTTGCAGAGAAGCTGTTTTAGCAAAACTGAAGGCAACGGAGCTTGAAAAGTTTAGGCAAGAAAAAGAACGCAACTTAGAGAAAGCTAGGATTGCTGAAGAGGCTGCATTGGCTTTGGCAGAGGTAGAGAAGCAGAAAGCCAAGGTGGCTTTGGAGTCAGCGGAAGTGTCACAACGCCTAGCAGAAATGGAAACTCAAAAGAGAAAGCAAGCTGAAATAAAAGCCAAAATTGAGGAAGAAGAAAGGAAAAGAGCATTACGTGAAGCTGTATATAATAGTATTCCATATAGAAGATACAATATTAAAGAAATTGAAGCTGCAACTAATGGCTTTGACAATGCTCTCAAAATTGGCGAAGGAGGATATGGACCAGTTTTTAAAGGAGTGCTTGATCACACTGTTGTTGCCATTAAGGTCCTGAGACCAGACTTAGCCCATGGAGAGAGACAATTTCAACAAGAGGTTGTTGTTTTGAGCACCATAAGACATCCAAACATGGTGCTCCTTCTAGGTGCATGCCCAGAGTTTGGATGTCTTGTGTATGAGTACATGGAATATGGCAGCTTAGAAGATTGTTTGTTCCAGAAAGATCACACCCCACCAATTCCATGGAAAATTCGATTCAAAATAGCATCAGAGATTGCCACTTGCCTTCTTTTCCTTCACCAGACAAAGCCTGAGCCTCTGGTGCATCGTGACCTGAAACCAGCAAACATTCTCTTAGACAAAAACTACGTGAGCAAGATCAGTGATGTGGGTTTGGCAAGGCTAGTTCCTCCTTCTGTAGCTGACAAAACCACGCAATATCGCATGACAGGTGCAGCTGGAACATTTTGCTACATTGATCCTGAGTATCAACAAACAGGGTTGTTGGGTGTGAAATCAGATATATATTCATTTGGTGTGGTATTGCTACAAATTATTACTGCAAAACTTCCAATGGGTTTGTCCCTTTTGGTTGAGGAGGCTATAAAAACAGGGAATTTCACTGATGTGCTTGATCCAAGTGTCACAGATTGA 2016 0.4177 MQTPAGARSTVIAINADRNSQYAVKWAVDHLLNKNSSCILIHVRTKPIHPHDVDHVPKHGRPPTEEELHQLFLTFRGFCARRGIVAKELVLHDIDVPSAFTYYVVENSIRNIVVGAYASPWSILIRRFKNEDVPTSLAKSLPESCTLHVVSKGKVQNIRPTGHPQNIQPQNINVPPTRSIRDLVTLLQNAPLVHPNQFLVDTPDSEDINRKPFKDAIGRESSNVWGSIGDIKDVILISSRKCNEDTNSPRGPRLSVGSSSSQTSSNRSSPANSDSSGRLGLHLPDTLHGNHEVVLSSDSSECILSSKPLISLETEIKKLKLELKKTTEQYGIACREAVLAKLKATELEKFRQEKERNLEKARIAEEAALALAEVEKQKAKVALESAEVSQRLAEMETQKRKQAEIKAKIEEEERKRALREAVYNSIPYRRYNIKEIEAATNGFDNALKIGEGGYGPVFKGVLDHTVVAIKVLRPDLAHGERQFQQEVVVLSTIRHPNMVLLLGACPEFGCLVYEYMEYGSLEDCLFQKDHTPPIPWKIRFKIASEIATCLLFLHQTKPEPLVHRDLKPANILLDKNYVSKISDVGLARLVPPSVADKTTQYRMTGAAGTFCYIDPEYQQTGLLGVKSDIYSFGVVLLQIITAKLPMGLSLLVEEAIKTGNFTDVLDPSVTD* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01905 671 CDD STK_N 9 153 - -
Rops4g01905 671 MobiDBLite consensus disorder prediction 242 283 - -
Rops4g01905 671 Gene3D Transferase(Phosphotransferase) domain 1 516 671 - -
Rops4g01905 671 SUPERFAMILY Protein kinase-like (PK-like) 422 649 IPR011009 -
Rops4g01905 671 Pfam Protein tyrosine and serine/threonine kinase 448 643 IPR001245 GO:0004672|GO:0006468
Rops4g01905 671 MobiDBLite consensus disorder prediction 242 276 - -
Rops4g01905 671 ProSiteProfiles Protein kinase domain profile. 443 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01905 671 Gene3D HUPs 7 150 IPR014729 -
Rops4g01905 671 PANTHER OS02G0152300 PROTEIN 11 671 - -
Rops4g01905 671 Coils Coil 392 420 - -
Rops4g01905 671 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 415 515 - -
Rops4g01905 671 Coils Coil 309 329 - -
Rops4g01905 671 Coils Coil 344 389 - -
Rops4g01905 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 561 573 IPR008271 GO:0004672|GO:0006468
Rops4g01905 671 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 10 119 - -
Rops4g01905 671 Gene3D Phosphorylase Kinase; domain 1 422 515 - -
Rops4g01905 671 SMART serkin_6 443 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01905 Rops-Chr4 44218666 44223413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01905 6 671 Receptor kinase-like Gene Family AT1G78940 47.033 0.0 552
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Rops4g01905 PK_Tyr_Ser-Thr 1.1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01905 - - gmx:100799611 880.937