Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01893 ATGGCTCTCATTGGTTCTTCTCCGTGCAACAACACTCTGATCCCTTCCCTTCTTTACGGTTCTTCCCCCAAAACCCTACCTCTCCACCAGATCCTCAGCACCGGCGTCACTGTCGCCGCCGCCTCAACCTCCGCACTCGGCAGCGGATCGTGCAGGAGTGGCCTCGTAATTTCGACTCCCAGTGAGCTCAGCGAGATCGAGATGTACTCGCCGTCGTTCTACGCCGCCTGTACCGCCGGTGGAGAAGTTTTGAACATGGTTGTGCTTTTTTATGAATACACCACTCGGAGAATCATAGGATATAACTCTGTTTCCTTGGCTCTAACATGGGTTTTGGTTACTATGGTTTTGTTGTATTCAAAGAAGATAACACTCAGGGAGAATAAAAGGTTCCCCGTTGTTCTAATTCTATGGTGGGTCTTTGCCAGTATAGTAGACATATTCTCAGTGACTTCAGAACTTGTAAAAAATTTCGGGTCTATGAACTTGTGGTTTTTCTTGTCCGAGGATAACATAGTTGACATGGTTTCCTTCCCCATGTTGTTATTTCTATGTTTCAATGCACTGCCTAATGTGTGTGTAAGGGAAAAAAGTGATATCGAACAAACGTTACTTCAGAAAGAGTTGGAATCTTCAAGGGAAGAAGATGAAGAGGCTTTCTCAAAGGCAAGTACATGGAGCAAACTCACATTCAGATGGTTGAATCCAATATTTAACTGGACTCGGATTCAAAAACTTGAACTTTCTCATATTCCTTCTGTTCCTCATTCTGAAACGGCAGAGAAAAATTCTTCCATTTTAGCAGGTGTTAACACTATTGCCTCTTATATGGGTCCATTGTTGATCTCAAATTTTGTGAAATTTTTATTGGGGAATAATGATAATTCAAGTATCCGATATGGACTGATTCTTGCATTCATTTTCTTCCTCTCAAAGACTGTGGAGTCACTAAGTCAAAGACAATGGTACTTTGGTGCTCAAAGAATTGGAATTCGGGTGGCTGGCATTTCAAAGAAATGGTTGGTCTTGATTGGTATCGCGCCTGGTTCCCCTGAGAGGCCGCAATTGGTTAAAGGAAACATGCAACTTTTCTCTGTGGATCAGCAACGCAGTCAGGCTCTTGAAGCTCATGCTGCATCATTTGCCCAATTTAAAGTTCCTGGGAACGAGAATCCTTCTACCTTGATTTCTTTTGCCTCAAAGACACTTAATGCTGGTCAAATTATATCCAAGTTGCATGTTATTGAGCTGGGTGCCCAACCAGGGAAGCCATCATTTACAAAGAAACAAGCAGATCTTTTCTTTCCCCCAGATTTTGCTGATGACTTTCCAGTTGCCATGCAGATATCCCACAAATACAGTTTGATTTATGTGATTACCAAGCTTGGCCTACTTTTTGTCTATGATTTGGAGACAGCTACTGCTGTGTATAGGAACAGAATTAGTCCAGATCCTATATTTTTGACATCTGAAGCTACATCGGTGGGAGGCTTTTATGCCATCAACAGGAAAGGCCAGGTTTTATTGGCTACTGTTAATGAACAAACCATTGTGAATTTTGTCAGTGGTCAATTAAACAATTTGGAGCTAGCAGTTAGTCTTGCCAAAAGAGGAAATATTCCTGGTGCTGAGAAGCTGGTAGTGGAACGCTTTCATGAACTGTTTGCCCAAACAAAGTATAAAGAAGCAGCTGAGCTTGCTGCTGAATCTCCACAAGGAATTCTTCGTACACCTGACACAGTTGCCAAATTTCAGAGTGTTCCTATGCAAGCTGGGCAAACTCCTCCACTGTTGCAGTATTTTGGAATACTTTTAACGAGGGGAAAGCTGACTGCCTTTGAGTCATTAGAATTATCTCGTGAGGAGCTAAGAGATCTCGTTAAGACTGTGGACAATGATCTTGCTTTAAAAATATATATCAAAGCCAGAGCTACCCCAAAAGTTGTTGCTGCTTTTGCTGAGAGGAGGGAGTTTGACAAAATTTTGATCTACTCTAAGCAGGTTGGGTACACACCTGACTACCTCTTCCTTTTGCAAACAATTCTCCGGACAGATCCTCAGGTGGCTGGCATTTCAAAGAAAGTTGCAAGCACTATAGGGATTGCTATTGATCATCGAAGGAAGAACCATTCTTTGGAGAGTCTTCAAGGATAA 2154 0.4239 MALIGSSPCNNTLIPSLLYGSSPKTLPLHQILSTGVTVAAASTSALGSGSCRSGLVISTPSELSEIEMYSPSFYAACTAGGEVLNMVVLFYEYTTRRIIGYNSVSLALTWVLVTMVLLYSKKITLRENKRFPVVLILWWVFASIVDIFSVTSELVKNFGSMNLWFFLSEDNIVDMVSFPMLLFLCFNALPNVCVREKSDIEQTLLQKELESSREEDEEAFSKASTWSKLTFRWLNPIFNWTRIQKLELSHIPSVPHSETAEKNSSILAGVNTIASYMGPLLISNFVKFLLGNNDNSSIRYGLILAFIFFLSKTVESLSQRQWYFGAQRIGIRVAGISKKWLVLIGIAPGSPERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSTLISFASKTLNAGQIISKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYSLIYVITKLGLLFVYDLETATAVYRNRISPDPIFLTSEATSVGGFYAINRKGQVLLATVNEQTIVNFVSGQLNNLELAVSLAKRGNIPGAEKLVVERFHELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPMQAGQTPPLLQYFGILLTRGKLTAFESLELSREELRDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQVAGISKKVASTIGIAIDHRRKNHSLESLQG* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01893 717 Gene3D - 314 547 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Rops4g01893 717 Pfam Clathrin, heavy-chain linker 514 537 IPR015348 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Rops4g01893 717 SUPERFAMILY Clathrin heavy-chain terminal domain 335 513 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Rops4g01893 717 Pfam Ribosomal protein L13e 688 716 IPR001380 GO:0003735|GO:0005840|GO:0006412
Rops4g01893 717 PANTHER CLATHRIN HEAVY CHAIN RELATED 337 689 - -
Rops4g01893 717 SUPERFAMILY ARM repeat 515 647 IPR016024 -
Rops4g01893 717 Pfam Clathrin-H-link 539 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01893 Rops-Chr4 43921511 43928466 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01893 687 716 Cytoplasmic Ribosomal Protein Gene Family AT5G23900 73.333 7.09e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01893 K04646 - gmx:547986 640.573