Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01880 ATGGAAAACTCCCACCAGGTTCAATGGGTTTGCCCCTTCTGGGTGAGAGAGACCCTTCATTTCATATCCTCTTACACTTCCTCTGATATTCAACCCTTTGTTAAGAAGCGAATGGAAAGGTATGGACCAATCTTCAAGACCAGCTTGATTGGACAATCAGTTGTAGTGTCAACAGACTCGGATCTTAATTACTTCATCTTCCAGAAAGAGGGACAATTGTTCCAGAGCTGGTACCCAGCTTCATATGCAAAGATTTTTGGGAACCAAAGTGTTTCCATACATGGTATTTTGCACAAATGCCTTAAGAAAATGGTGTTGAATCTATTTGGCCATGAAGGTCTTAAAAAGATGCTCCCAGAAGTTGAACAAACAACATGCAGAACATTGCAACAATGGTCGTGTCAGGATAGTGTTGAATTGAAGGAAGCAATACAAACGATGATATTTGATTTGTCTGCCAAAAAACTCATTAGTTATGATTCTACCAAGTCCTCAGAGAATTTAAGGGACAACTTTGCTGCTTTTATGCGAGGAATATTCTCGTTGCCTCTAGACATTCCAGGAACAGCCTTTCACAAATCTCTAGAGGGTAGGAAAAGCGCAATGAAGATGCTAAAGAAATTGCTGCATGAAAGACGGGAACTGAATAAGAAACAGCAGACTGATTTCTTTGACTTTGTTATTGAAGAACTTGGGAAAGAAGGAACAATCCTCACTGAAGAGATCATTTTGGACCTCATATTTTCCCTTCTCTTTGCAAGCTTTGAAACCACTTCGCTGACCCTGACTTATGCTATGAAATTACTCACTGACCATCCCATGGTGCTCAAGCAATTACAAGAAGAACATGAAGCCATTCTCAAACGACGTGAAGATCCTAATTCAGGAGTCACGTGGCAAGAATACAAATCAATGAGATTTACAATTCAGTTCATAAATGAAACTCTGAGACTCGCAAATATAACTCCTGCAATCTTCCGGAAGACACTAAGGGATTTTAATTTTAAGGACTTTGCTAAGGTTGAGATGGCTGTTTTTCTTCATAAGTTGGTAACAGGTTACAGATCTGAAAGTGATTATCTTGAAAATGACAGTGCTAAGATTCCATTATATAGTTTTGATAATCCTATCAATCATACTAATGAGGATAATGAAGATGATTGGGAGCCTCCCCCTGAACTGATGAGATTAGTTGAACAAGAAGCCAAAGAGATTCAACCCAATGAAGAACCAATTGAAATGATTAACTTGGGTACTCAGGATGACAAAAAAGAGGTTAAAATTGGTACCTCAATGAAGGAAGGTGAACGTAGCAAGTTGGTTAAGCTCCTACGTGATTACGTCGATGTCTTTGCATGGTCGTATCAAGACATGCCGGGGCTAGACACAAGTATAGTTGAGCATAAACTACCACTAAAACCTGAATACCCCCCAATTAAGCAGAAATTGAGGCGAATGCGACCTGATATGTCATTAAAAATCAGAGAAGAAGTTAAGAAGCAGTTTGATGCTGGTTTTCTTGCAGTCGCTAAATACCCTCAATGGGTTGCCAATATTGTCCTAGTCTCCAAGAAATATGGTAAAGTTCGAATATGTGTTGACTATCGGGACCTAAATAGGGCTAGTCCTAAAGACGATTTTCCATTGCCTCACATTGATGTCCTTGTAGATAACACTGCCCAACATTCAGTATTCTCTTTCATGGATGGATACTCAGGCTACAATCAGATCAAGATGGCCCCTGAAGATATGGAGAAAACTACGTTCATCACACCATGGGGAACCTTTTGCTACAAAATAATGTCATTTGGGCTGAAAAATGTTGGGGCAACATACCAAAGGGCGATGGTGACCTTGTTCCATGATATGATGCACAAGGAGATAGAGGTTTATGTTGATGATATGATTGCGAAGTCGAGAACAGAAGAAGACCATGTCATCAATTTGAAGAAATTATTTGAGAGATTAAGGAAGTTTAAGTTGAGATTGAATCCAGCCAAATGCACTTTCGGTGTAAGGTCTGGTAAGCTGTTGGGATTTGTGGTCAGTCATAAAGGGATTGAAGTAGATCCTGACAAAGTTCGAGCCATCCAAGAGATGCCAGCTCCTCGGACGGAAAAAGAAGTACGTAGGTTTTTGGGAAGACTTGGCGACTCCACTGGGGATTTCGGTTATGACACTTTGCTTATAAAAAAAATATTTTAA 2205 0.3982 MENSHQVQWVCPFWVRETLHFISSYTSSDIQPFVKKRMERYGPIFKTSLIGQSVVVSTDSDLNYFIFQKEGQLFQSWYPASYAKIFGNQSVSIHGILHKCLKKMVLNLFGHEGLKKMLPEVEQTTCRTLQQWSCQDSVELKEAIQTMIFDLSAKKLISYDSTKSSENLRDNFAAFMRGIFSLPLDIPGTAFHKSLEGRKSAMKMLKKLLHERRELNKKQQTDFFDFVIEELGKEGTILTEEIILDLIFSLLFASFETTSLTLTYAMKLLTDHPMVLKQLQEEHEAILKRREDPNSGVTWQEYKSMRFTIQFINETLRLANITPAIFRKTLRDFNFKDFAKVEMAVFLHKLVTGYRSESDYLENDSAKIPLYSFDNPINHTNEDNEDDWEPPPELMRLVEQEAKEIQPNEEPIEMINLGTQDDKKEVKIGTSMKEGERSKLVKLLRDYVDVFAWSYQDMPGLDTSIVEHKLPLKPEYPPIKQKLRRMRPDMSLKIREEVKKQFDAGFLAVAKYPQWVANIVLVSKKYGKVRICVDYRDLNRASPKDDFPLPHIDVLVDNTAQHSVFSFMDGYSGYNQIKMAPEDMEKTTFITPWGTFCYKIMSFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSRTEEDHVINLKKLFERLRKFKLRLNPAKCTFGVRSGKLLGFVVSHKGIEVDPDKVRAIQEMPAPRTEKEVRRFLGRLGDSTGDFGYDTLLIKKIF* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01880 734 PRINTS E-class P450 group I signature 38 57 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01880 734 PRINTS E-class P450 group I signature 309 327 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01880 734 PRINTS E-class P450 group I signature 242 259 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01880 734 PRINTS E-class P450 group I signature 262 288 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01880 734 SUPERFAMILY Cytochrome P450 14 356 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01880 734 Pfam Cytochrome P450 27 338 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01880 734 Gene3D - 547 682 IPR043128 -
Rops4g01880 734 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 207 716 - -
Rops4g01880 734 Coils Coil 198 218 - -
Rops4g01880 734 CDD RT_LTR 505 682 - -
Rops4g01880 734 SUPERFAMILY DNA/RNA polymerases 465 717 IPR043502 -
Rops4g01880 734 Gene3D Cytochrome P450 5 339 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01880 734 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 466 607 - -
Rops4g01880 734 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 523 681 IPR000477 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01880 Rops-Chr4 43470651 43472079 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01880 17 339 Cytochrome P450 AT1G12740 64.198 9.45e-147 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01880 - - cam:101492158 597.045