Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01864 ATGAAGTACTCATCTGAGAAAGACTCTACACTGTCTTCTGCCCATTTAACATCTCCTTGTGTTTTTGGATGCTCATCAAGGGGGACTTCTTCTGAATCTGACATGCAACAATCATCCATGTCCAAAAGTTTGACCTTGAAAATGAGTTTTTTGCCACAACAATGCAATAATACTAAGCCACCGAGTTATCAATTTCAAGACCAAGATTCTTCTTCAACTCAATCAACTGGTCAATCTTATCTAGAAGTCGGTTCAGTACAATCGGGTCAAATTTCTGTCCAGTATAGCAATTCTTCTGCTTGTTCAACACTTAGCAAAAATAGTGGAAAGAGTGTGGAAGGTCTCATCAGGTCATCTGTGGGGAGTCAGGATTTTACCTTCCCTCCTTCACAACTGGGTCACAACCAATCACTTGATCATATTGCATTCCACCATGCTGAGCCATGCTTTAGTGGTCTACTAGCTGCTCCATATGCACCACAACCTAATATTCATCATGCTCAACTAATAGGAATGGCTCCTGTTCGAATTCCTCTGCCACTTGATCTTAGTCAAGAACCTATCTATGTGAATGCAAAGCAGTACCATGCTATTCTGAGGCGTAGACAATATCGTGCAAAACTTGAAGCACAGAACAAACTCATCAAAGATCGGAAACCATATCTTCACGAGTCCCGCCATCTACATGCAGTGAAGAGAGCCAGAGGTTCTGGTGGACGATTTCTGAATACCAAAAAGCTCCAAGAATCAAAGCTTACTTCAGCCAACCATGGCCTAGATGTTTCAAACTGTACTCAGTTGAATCTGAGTGGAAAAGTTTCAGAATCTAAGGTGCATGCGGTAGAAAATTACAGAGACGGTGCTTCCACAACCACCTGTTCTGATATGACAAGTGCATCTAATAGTGATGACATATTCCAGCAACAGGAGTCAGACTTCAGATTATGTGGTTACCCTTCTCATATTAGAAGGAACATACAAGGTTACTCAGCTGATATGGGTGGTTGTGGTGGGAATCAACACCATCTATCAGTCCTCATGTAA 1044 0.4176 MKYSSEKDSTLSSAHLTSPCVFGCSSRGTSSESDMQQSSMSKSLTLKMSFLPQQCNNTKPPSYQFQDQDSSSTQSTGQSYLEVGSVQSGQISVQYSNSSACSTLSKNSGKSVEGLIRSSVGSQDFTFPPSQLGHNQSLDHIAFHHAEPCFSGLLAAPYAPQPNIHHAQLIGMAPVRIPLPLDLSQEPIYVNAKQYHAILRRRQYRAKLEAQNKLIKDRKPYLHESRHLHAVKRARGSGGRFLNTKKLQESKLTSANHGLDVSNCTQLNLSGKVSESKVHAVENYRDGASTTTCSDMTSASNSDDIFQQQESDFRLCGYPSHIRRNIQGYSADMGGCGGNQHHLSVLM* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01864 347 ProSiteProfiles NF-YA/HAP2 family profile. 184 244 IPR001289 GO:0003700|GO:0006355
Rops4g01864 347 MobiDBLite consensus disorder prediction 1 21 - -
Rops4g01864 347 PRINTS CCAAT-binding transcription factor subunit B signature 218 241 IPR001289 GO:0003700|GO:0006355
Rops4g01864 347 PRINTS CCAAT-binding transcription factor subunit B signature 187 209 IPR001289 GO:0003700|GO:0006355
Rops4g01864 347 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 186 241 IPR001289 GO:0003700|GO:0006355
Rops4g01864 347 Gene3D - 184 246 - -
Rops4g01864 347 ProSitePatterns NF-YA/HAP2 subunit signature. 189 209 IPR018362 GO:0003677|GO:0016602
Rops4g01864 347 SMART cbf3 183 244 IPR001289 GO:0003700|GO:0006355
Rops4g01864 347 MobiDBLite consensus disorder prediction 57 79 - -
Rops4g01864 347 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 41 308 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01864 Rops-Chr4 43321801 43324305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01864 10 345 CCAAT-HAP2 Transcription Factor Family AT1G17590 42.690 1.96e-60 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Rops4g01864 CBFB_NFYA 1.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01864 K08064 - gmx:100500765 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01864 4 43321801 43324305 Rops4g01864 4 43321801 43324305 ECH
Rops7g00386 7 4976189 4980454 Rops4g01864 4 43321801 43324305 PCT