Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01856 ATGTATCTCCTCCCTGGGGTTCTGTTAATTGGAGTTCTGGCAATTGCCTTCACATTTTTCAGTCTTACTATGCTTGGATGTTGCAATTACACCAATCACATGTCACCCCCTCCTACAACAGCCGTATCTGACAAGTTATCTGCTTGCATGAGTTTAGAGTCACATTCTATTACATTCATATACAAGGAAGCAGAAGAGGCCGCAGGAGGCACAAACCAGAATGAATGTGTTATCTGCTTGACAGACTTTCAAGAAGAGGAAAGTGTCAGGAAGCTTCACACTTGCAAGCATATCTTCCATACATCTTGTATTGATAAGTGGCTTGGCTCTCATTCTGGCTGCCCTTTGTGCCGCACTCAGATTGACAAAGAGGATCCCTCAAATGGGACAGTGGCAAATGATCACATGATCATGGTCATTGTTTAA 426 0.4319 MYLLPGVLLIGVLAIAFTFFSLTMLGCCNYTNHMSPPPTTAVSDKLSACMSLESHSITFIYKEAEEAAGGTNQNECVICLTDFQEEESVRKLHTCKHIFHTSCIDKWLGSHSGCPLCRTQIDKEDPSNGTVANDHMIMVIV* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01856 141 SMART ring_2 76 117 IPR001841 -
Rops4g01856 141 ProSiteProfiles Zinc finger RING-type profile. 76 118 IPR001841 -
Rops4g01856 141 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 127 IPR013083 -
Rops4g01856 141 Pfam Ring finger domain 74 118 IPR001841 -
Rops4g01856 141 SUPERFAMILY RING/U-box 75 124 - -
Rops4g01856 141 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 9 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01856 Rops-Chr4 43211347 43211772 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01856 9 118 C3H Transcription Factor Family AT1G76410 34.545 3.81e-17 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01856 - - mtr:25500542 202.216