Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01855 ATGAGGTATCTTATGGCTAAGGTGGAGAGTAGAGACAAAGAAAGATCCAGAATGCACAAGAGTCAATCCAATGGCATATTCTTCTTCTGGAGCTTCTCATATCAAGTATATTTCTTTGTTTGTCTCTTGCTTATTACCAAATTGAAGGGTGAAGTGGCAAACATAAATTTAGATAAGGATTCTTCATATCCTACTATATTCCTTTCTGACACTGCTCCTCAACCTCAAGTAAAATATGATGTCTTTGTTAGCTTTAGGGGTCCAGACATTCGCCAAGGTTTCCTTGGCCATTTGGTTGAGGCTTTATCTCGAAAGCAAATTGTTGCCTTTGTAGATGATAAGCTTCCAAGAGGAAATGAAATATCAAAATCACTTCTCAGAGCAATTGAAGGATCGTTGATTTCATTGATCATATTCTCACAAAACTATGCTTCTTCACGTTGGTGTTTGGAAGAGCTTGTGAAGATAGTTGAGTGCAGAGAAAAATATGGACAGATTGTGCTCCCTGTTTTCTACAAAGTAGATCCCACAGATGTAAGGCATCAAAAGGGAACTTATGAAAATGCATTTGCTGAACATGAAAAAAAGCATCATTTGGTCAGGGTGCTGGCCTGGAGATCTGCTTTGAACGAATCTGGAAATATATCCGGATTTCATTCATCGAATTTTTTGAATGAAGCTGAGCTTGTTGAAGAAATAGTTAAATGTGTGTTGATGAGGTTGAATCATGTGCACCAAGTTAACACCAAAGGACTTGTCAGAATTGGCAAACAAATTTCACATGTAGAGTCATTGTTAGAGTTAGAGTCAGAAGATGTTCGTGCTATTGGGATTTGGGGTATGGGGGGCATTGGTAAAACAACTATTGCAGAAGAAGCATATAACAGATTATGTGTTGATTTCGACAGTTGTTGTTTTATGGCTAATGTAAGGGAAGATGCAGAAAAAAATGGAGTAATCTATTTAAAGAAAACCCTTTTTTCAACTCTATTAGGGGATCCAGATTTGAAAATTGACACACCAAATGGACAGCCTCTTTTTGTTGAGAGAAGGCTTCGTCGTTTGAAAGTTCTTATTGTTCTTGATGATGTCAATGATTCACAGAAATTAGATATTTTGATTGGAACACTTGATTTGTTTGGAAAAGGTAGTAGAATTATCATAACAACCAGAGATAAGCAAGTGCTTGCTAAAAAGGTTGTTGATATATATGAAGTTAAGGCATTGGACTTCGGTGAATCTCTTCGGCTTTTCAGTTTGAACTCCTTTCAACAAGATCATCCTGAAACAGAGTTCCATGAGCTATCGAAGAGGATGGTCAATTATGCCCAAGGTGTTCCATTAGTTCTTCAAGTGTTGGGTTGTCTTCTCCATGGAAAGGATAAAAGAATATGGGAAAGCCAATTAGAGAAGCTTAATAAAGTGCCAATTCAAACTGTTCATGATCTTATTAGATTGAGTTACAACGACCTTGATCGTGATGAAAAGAAGATACTTCTGGATATTGCATGTTTCTTAGATGGATTGAATTTGAAAGTTGACATCATAAAACATCTATTGAAAGAAGATCGTTGTTATTCAGTGGATGCTGAATTAGAAAGGCTAAAAGATAAAGCTCTTATAACCATTTCTCAAGATAATAATATTATATCGATGCATAACATTATACGAGAAACAGCTCGGGAAATTGTTCGCTTAGAATCTATTGAAGACCCTGGAAACCGAAGTCGACTATTTGATCCTGATGACATTTATCAAGTACTGAAAAATAACAAGGGAAGTGAGGCTATTAGAAGCATAGGCATCAACTTGTCGATAATTACGGAGCTGCAATTAAGCCCTCAAGTCTTTGCAAAAATGAGCAAACTACAATATCTGGATATTTATTGTAAGCAGTCTTGTAACATCCTTCAGGATCGCAGGGACTTGTATCTTCCTCAAGGGCTTGAATCTTTACCGAATGGATTAAGGTTTCTTCGTTGGGCACATTACCCTTTTCAATTCTTGCCATCCAAGTTTTCTGTGGAAAAACTTGTTGTATTGAACTTGCAGTACAGCCAAGTGAAAAAACTATGGCATCAAGAGCAGGAGGATCTTGTGAATTTAAGGATTCTTATACTCCGTTCATCCTCACACCTGATGGAGCTGCCAGACTTGTCAAAGGCAACAAATCTGGCAGAAATAGATCTTCGTATGTGTGGAAGGTTGACCAGTGTGCATCCATCTGTTTTCTCCCTCAACAAGCTTGAAAAATTGTATCTAGGTGGATGCATTTCCCTGAAAAGCCTTCAAAGCAATATCCATTTAAGCTCCCTTCGTTATCTTTCCCTTGCTGGCTGCATTGCACTAAAGGAATTCTCAGTGACCTCAAAGAACATGATAATAAATTTACGGCATTGCAGGGAGCTTCATACTCTAACAGAGCTTCCCCCATCATTAGAAATGCTAGATGCCAGTGGCTGCATGTCACTGGAGACTGTAACCTTCGGTTCAACTGCAATTAAACAAACGAAGGAAAACAAGAAAAGGGTTGCATTCTGGAACTGCCTGAAATTGGATGAACATTCTCTCAAGGCTATTGAGCTAAATGCCCGAATTAACATGATGAAGTTTGCACACCAACATATATTATCCACATTTGGTGGCGATTATGGTGCTCGAGGCACGTATGTGTATCCGGGAAGCAGTGTTCCTGAGTGGTTGGTGTACAGGACGACACATGATTACATACCTATTGATCTCTCTTTTGCCACTCGTTCCTCCTCTCAGTTGGGCTTCATTTTTTGTTTCATCATTCCTGAAGTTGCACCAAAGGGTTTGTTTCTGATAATTAACATCAATGATGGAGAAGATGAAGGCACTGGTATCCATCTGTACTTGGACAGACCAAGCACTGGAATTAAATCGGATCATGTGTATCTGATGTATGACCAAGGATGTTCTCGCTACTTAAATAGTCGAGCCAAACATCAGCCAAAGTTTAAAATTAAGGTCACAGCGGTGTCACAAACACTGACAGCATGGGCTTGCTATGGTATTCTAAGGTTTGGTAGCGAAGGTGGAACAGAAGGTTGTGATGTTAGTAGAGCTATTAACATGGGGTAA 3105 0.3868 MRYLMAKVESRDKERSRMHKSQSNGIFFFWSFSYQVYFFVCLLLITKLKGEVANINLDKDSSYPTIFLSDTAPQPQVKYDVFVSFRGPDIRQGFLGHLVEALSRKQIVAFVDDKLPRGNEISKSLLRAIEGSLISLIIFSQNYASSRWCLEELVKIVECREKYGQIVLPVFYKVDPTDVRHQKGTYENAFAEHEKKHHLVRVLAWRSALNESGNISGFHSSNFLNEAELVEEIVKCVLMRLNHVHQVNTKGLVRIGKQISHVESLLELESEDVRAIGIWGMGGIGKTTIAEEAYNRLCVDFDSCCFMANVREDAEKNGVIYLKKTLFSTLLGDPDLKIDTPNGQPLFVERRLRRLKVLIVLDDVNDSQKLDILIGTLDLFGKGSRIIITTRDKQVLAKKVVDIYEVKALDFGESLRLFSLNSFQQDHPETEFHELSKRMVNYAQGVPLVLQVLGCLLHGKDKRIWESQLEKLNKVPIQTVHDLIRLSYNDLDRDEKKILLDIACFLDGLNLKVDIIKHLLKEDRCYSVDAELERLKDKALITISQDNNIISMHNIIRETAREIVRLESIEDPGNRSRLFDPDDIYQVLKNNKGSEAIRSIGINLSIITELQLSPQVFAKMSKLQYLDIYCKQSCNILQDRRDLYLPQGLESLPNGLRFLRWAHYPFQFLPSKFSVEKLVVLNLQYSQVKKLWHQEQEDLVNLRILILRSSSHLMELPDLSKATNLAEIDLRMCGRLTSVHPSVFSLNKLEKLYLGGCISLKSLQSNIHLSSLRYLSLAGCIALKEFSVTSKNMIINLRHCRELHTLTELPPSLEMLDASGCMSLETVTFGSTAIKQTKENKKRVAFWNCLKLDEHSLKAIELNARINMMKFAHQHILSTFGGDYGARGTYVYPGSSVPEWLVYRTTHDYIPIDLSFATRSSSQLGFIFCFIIPEVAPKGLFLIININDGEDEGTGIHLYLDRPSTGIKSDHVYLMYDQGCSRYLNSRAKHQPKFKIKVTAVSQTLTAWACYGILRFGSEGGTEGCDVSRAINMG* 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01855 1034 Gene3D - 243 404 IPR027417 -
Rops4g01855 1034 ProSiteProfiles TIR domain profile. 77 241 IPR000157 GO:0007165
Rops4g01855 1034 FunFam Disease resistance protein (TIR-NBS-LRR class) 75 243 - -
Rops4g01855 1034 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 240 502 IPR027417 -
Rops4g01855 1034 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 79 821 IPR044974 GO:0006952
Rops4g01855 1034 Pfam NB-ARC domain 264 482 IPR002182 GO:0043531
Rops4g01855 1034 Gene3D - 74 242 IPR035897 -
Rops4g01855 1034 SUPERFAMILY Toll/Interleukin receptor TIR domain 69 218 IPR035897 -
Rops4g01855 1034 SUPERFAMILY "Winged helix" DNA-binding domain 480 589 IPR036390 -
Rops4g01855 1034 PRINTS Disease resistance protein signature 275 290 - -
Rops4g01855 1034 PRINTS Disease resistance protein signature 443 457 - -
Rops4g01855 1034 PRINTS Disease resistance protein signature 351 365 - -
Rops4g01855 1034 PRINTS Disease resistance protein signature 767 783 - -
Rops4g01855 1034 Gene3D - 409 492 IPR042197 -
Rops4g01855 1034 Pfam TIR domain 78 247 IPR000157 GO:0007165
Rops4g01855 1034 SUPERFAMILY L domain-like 603 829 - -
Rops4g01855 1034 Gene3D Ribonuclease Inhibitor 543 868 IPR032675 -
Rops4g01855 1034 SMART till_3 78 215 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01855 Rops-Chr4 43190874 43195937 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01855 79 835 WRKY Transcription Factor Family AT4G12020 33.375 5.64e-107 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01855 - - gmx:100802823 1226.85