Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01854 ATGTTTGCAGCAAGGCTAGACCGTGAAGATATGTTCCTTGAGGAAATGGTAGGTGAAAGGGCAAATGTAATGTCAAACAAGGATTCTTCATATCCTACCATGTTCCTTTCTTCTAGCACTGCTCCTCAAATAAAATATGATGTCTTTGTTAGCTTCAGGGGTCCAGACATCCGCCAAGGTTTCCTTAGTCATTTGGTTGAGGCTTTATCTCGAAACCACATAGTTGCCTATGCAGACCATAAGCTTCCGAAAGGAAATGAAATATCACAATCACTTGTTGGAGCAATTGAAGGATCGTTGATTTCATTGATCATATTCTCACAAAACTATGCTTCTTCACGTTGGTGTTTGGAAGAGCTTGTGAAGATAGTTGAGTGCAGAGAAAAAATGGGACAGATTGTACTACCTGTTTTCTACAAAGTAGATCCCACAGATGTAAGGCATCAAAGGGGAACTTATGAAAAAGCATTTGTTGAACATGAAAACAAGCATAGTTTGGTCAGGGTCCTAACCTGGAGATCTGCTTTGAAAGAATCTGCTCAGTTCTCCGGATTTCATTCATCCAATTTTTTGAATGAAGCTGAGCTTGTTGCAGAAATAGTTAAATGTGTGTTGATGAGGTTGAATCATGTGCACCAAGTTAACTCAAAAGGACTTGTCGGAATTGGCAAACCAATTTCACATGTAGAATCATTGTTACAGTTAGAGTCAGAAGATGTTCGTGCTATTGGAATTTGGGGAATGGGTAGGATCGGTAAAACAACTATTGCAGAAGAAGCATATAACAGATTATGTTTGGAATTCAACGGTTGTTGTTTTATGCATGATGTAAGGGAAGAGTCAGGAAGGCATGGGGTAATCTATTTAAAGAAAAAGCTTTATTCAACTCTACTAGGGGAACAAGATTTGAAAATTGACACAACAAATGGATTGCCTCATTTTGTCCAGCGAAGGCTTCGTCGTATGAAGGTTCTTATTGTTCTTGATGATGTAAATGATTCAAAGCAATTAGAAATTTTAATTGGAACACTTGATTGGTTTGGAAAAGGTAGCAGAATCATCATAACAACTAGAGATAAGCAAGTGCTTGCTAAAAAGGTTGTTGATATATATGAAGTCAAGGCACTAGACTTTGATGAATCTACTCGGCTTTTCAATTTGAATGCCTTTGAACAAAATCATCTTGGAATAGAGTACTATGAGACAGCAAAGAGGATGGTCAATTATGCCCAAGGTGTTCCATTCGTTCTCAAAGTTTTGGGTCATCTTCTTTGTGGGAAAGATAAACAAATATGGGAAAGTCAGTTAGAGAAGCTTAAAAAAGTGCCAATTAAAAATGTCCATGATGTCATTAGATTTAGTTACCACGATCTTGATCGTGATGAAAAGAAGATATTTTTGGATATTGCATGTTTCCTAGATGGATTGAATTTGAAAGTTGACATCATAAGACATCTATTGAAAGAAGATCGTGGTTATTCAGTGGATGCTGAATTAGAAAGGCTAAAAGATAAAGCTCTTATAACTATTTCTCAAGATAATATTGTATCGATGCATAGCATTATACAAGAAACAGCTTGGGAAATTGTTCGCGAAGAATCTATTGATGACTCTGGAAACCAAAGTCGACTATTGGATCCTGATGCCGTTTATCAAGTACTGCAAAATAACAAGGTGAATGAGGCTATTAGAAGCATAGCCATCGACTTGTCGATAATTAAGGAGCTGCAGTTAAAGCCTCTAGTCTTTGCTAAGATGAGCAAACTAAAATACCTGGATATTTATGGTAAGGGGTCTAGTAATTTCCTCCAGGATCGAGGGGGATTGTATTTTCCTCAAGGGCTTGAATCTTTGCCAAATGGACTAAGATATCTTCGTTGGGCACAATACCCTTTAGAATCCTTGCCGTCCAAGTTTTCTGGTGAAAACCTGGTTGTGTTGAACTTGCAGTATAGCCGAGTGAAGAAACTTTGGCATAAGGAGCAGGATCTTGTGAATTTAAACGTTCTTACACTCAGTTTATCCTCACACCTGATGGAACTGCCAGACTTGTCAAAGGCAACAAATCTTGCAGTAATAGATCTTCGTATGTGTGAAAGGTTGACCAGTGTTCATCCATCTGTTTTCTCCCTCAACAAGCTTGAAAAATTGTATCTAGGTGGATGCATTTCCCTCACAAGCCTTCAAAGCAATATTCATTTAAGCTCCCTTCGTTATCTTTCCCTTGCTGGCTGCATTGCACTAAAGGAATTCTCAGTTATCTCAAAGAGTATGATAGATTTGAATTTAGAACTCACTGGTATCAAACAACTACCCTCATCTATCGGACTTCAAAGCAAACTTCAAAAGCTGCGTCTTGCAAACACCTCCATTGAGCACTTGCCTGCAAGCATGAAGCATCTTATAAAGCTGCTACATCTAGATTTACAGCATTGCAGGGAGCTTCAGACTTTACCAGAGCTTCCCCCATCACTCGAAACGCTGGATGCCAGTGGCTGCATATCACTGGAGACTGTGACCTTCCCTTCAACTGCTATTCAACAACTGAAGGAAAACAAGAAAAGGGTTGCATTCTGGAACTGCCTGAAATTGAATGAACATTCTCTCAAGGCTATAGGGCTAAATGCCCAAATTAACATGATGAAGTTTGCACACCAACATTTAATATCCACATTTGGTGGTGATGATGGTGGTTCTCAAGGCACGTACGTGTATCCGGGAAGCAGTGTTCCTGAGTGGTTAGCGTATAGGACAACACATGATTACATAACTATTGATCTTTCTTTTGCTACCCATTCCTCTCAGATGAGCTTCATTTTTTGCTTCATCGTTCCGGAAGTTGCATCAGAGGGTTTGATTTTGATATTTAACATCATTGGTGGTGAAGATGAAGGCGTTCGTCGATATGAATGGTTACACGTGGGAATGCTCAAGCAACGGAGGATCCCCCTGTCTGCTTCTCGCTCCGCCGTGGGTGGTGTACCTGCAAGGCCCTCCGACACTCAAGTTAGTGATGGTGGTGGAAGAAAGGGTGTTTAA 3039 0.3968 MFAARLDREDMFLEEMVGERANVMSNKDSSYPTMFLSSSTAPQIKYDVFVSFRGPDIRQGFLSHLVEALSRNHIVAYADHKLPKGNEISQSLVGAIEGSLISLIIFSQNYASSRWCLEELVKIVECREKMGQIVLPVFYKVDPTDVRHQRGTYEKAFVEHENKHSLVRVLTWRSALKESAQFSGFHSSNFLNEAELVAEIVKCVLMRLNHVHQVNSKGLVGIGKPISHVESLLQLESEDVRAIGIWGMGRIGKTTIAEEAYNRLCLEFNGCCFMHDVREESGRHGVIYLKKKLYSTLLGEQDLKIDTTNGLPHFVQRRLRRMKVLIVLDDVNDSKQLEILIGTLDWFGKGSRIIITTRDKQVLAKKVVDIYEVKALDFDESTRLFNLNAFEQNHLGIEYYETAKRMVNYAQGVPFVLKVLGHLLCGKDKQIWESQLEKLKKVPIKNVHDVIRFSYHDLDRDEKKIFLDIACFLDGLNLKVDIIRHLLKEDRGYSVDAELERLKDKALITISQDNIVSMHSIIQETAWEIVREESIDDSGNQSRLLDPDAVYQVLQNNKVNEAIRSIAIDLSIIKELQLKPLVFAKMSKLKYLDIYGKGSSNFLQDRGGLYFPQGLESLPNGLRYLRWAQYPLESLPSKFSGENLVVLNLQYSRVKKLWHKEQDLVNLNVLTLSLSSHLMELPDLSKATNLAVIDLRMCERLTSVHPSVFSLNKLEKLYLGGCISLTSLQSNIHLSSLRYLSLAGCIALKEFSVISKSMIDLNLELTGIKQLPSSIGLQSKLQKLRLANTSIEHLPASMKHLIKLLHLDLQHCRELQTLPELPPSLETLDASGCISLETVTFPSTAIQQLKENKKRVAFWNCLKLNEHSLKAIGLNAQINMMKFAHQHLISTFGGDDGGSQGTYVYPGSSVPEWLAYRTTHDYITIDLSFATHSSQMSFIFCFIVPEVASEGLILIFNIIGGEDEGVRRYEWLHVGMLKQRRIPLSASRSAVGGVPARPSDTQVSDGGGRKGV* 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01854 1012 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 46 752 IPR044974 GO:0006952
Rops4g01854 1012 Pfam TIR domain 45 218 IPR000157 GO:0007165
Rops4g01854 1012 Gene3D Ribonuclease Inhibitor 757 876 IPR032675 -
Rops4g01854 1012 Gene3D - 43 211 IPR035897 -
Rops4g01854 1012 SMART till_3 45 182 IPR000157 GO:0007165
Rops4g01854 1012 Gene3D Ribonuclease Inhibitor 523 756 IPR032675 -
Rops4g01854 1012 ProSiteProfiles TIR domain profile. 44 208 IPR000157 GO:0007165
Rops4g01854 1012 FunFam Disease resistance protein (TIR-NBS-LRR class) 42 210 - -
Rops4g01854 1012 Gene3D - 212 370 IPR027417 -
Rops4g01854 1012 SUPERFAMILY L domain-like 567 866 - -
Rops4g01854 1012 Gene3D - 375 459 IPR042197 -
Rops4g01854 1012 Pfam NB-ARC domain 236 447 IPR002182 GO:0043531
Rops4g01854 1012 FunFam Disease resistance protein RPS4 560 756 - -
Rops4g01854 1012 MobiDBLite consensus disorder prediction 988 1012 - -
Rops4g01854 1012 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 469 IPR027417 -
Rops4g01854 1012 SUPERFAMILY "Winged helix" DNA-binding domain 446 554 IPR036390 -
Rops4g01854 1012 PRINTS Disease resistance protein signature 799 815 - -
Rops4g01854 1012 PRINTS Disease resistance protein signature 318 332 - -
Rops4g01854 1012 PRINTS Disease resistance protein signature 410 424 - -
Rops4g01854 1012 PRINTS Disease resistance protein signature 242 257 - -
Rops4g01854 1012 SUPERFAMILY Toll/Interleukin receptor TIR domain 36 185 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01854 Rops-Chr4 43182793 43188159 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01854 27 845 WRKY Transcription Factor Family AT4G12020 35.174 2.29e-118 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01854 - - gmx:100802823 1313.52