Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01843 ATGGGTAGACGTCCTTGCTGTCCCAAAGAGATCAACAAAGGTGCTTGGTCTCGAGAAGAAGATGAAACCCTCTCCAAATATGTAGCCATTCATGGAGAAGGCAAATGGCAAAAGGTTGCACAAAATGCAGGTTTAAAGCGGTGTGGAAAGAGTTGCAGACAAAGATGGTTGAATTATCTTAAGCCTGGAATAAAGAGAGGTGACATCTCTGTAGATGAAGAGGATATGATCATAAGACTTCATCGTCTTCTTGGTAACAGATGGGCTTTGATAGCAAAGAGGCTACCGGGACGAACAGACAATGAAATCAAGAATTATTGGAATACTAATCTGTCAAAGAAGTTACAGAAACAGCCTACATCATCATCATGGCCATCAGCTATTTCCCTTCAACATAACCAAATTCATAAATGTGAACATGAGAAGACCAAACAAGTTCATGTAGCACCTGAAGCTCCAAGGCCTAGGAGAGTTAAGGCTGTTCAATACAATAAAATTTTGGAGAATAATAAAGGGAGTGAGTGTGATGGGCCTAGTGCTAGTCCCTCAAACAAATTAGAGGGCAGTGATGAAGCTTCTCTTACTGATTTCCTCATTGATATTGATCAGAACCAAATGCTGATTGATGATGATGACTCCAACTCAAAGCTCCCACAAATCAAAGATCACAACAAGGTGGGCTTAACCAACAACAGTCCTAGCTCATCACCTTCTGATCCCTTATCAGAGAAATCTGACCCTTTGGAGACCCTTTTGGATGTGGAGCTCAAGAAGATGGCTTCCTTTCTTGGACTGGAAAATGAATGA 807 0.4139 MGRRPCCPKEINKGAWSREEDETLSKYVAIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGDISVDEEDMIIRLHRLLGNRWALIAKRLPGRTDNEIKNYWNTNLSKKLQKQPTSSSWPSAISLQHNQIHKCEHEKTKQVHVAPEAPRPRRVKAVQYNKILENNKGSECDGPSASPSNKLEGSDEASLTDFLIDIDQNQMLIDDDDSNSKLPQIKDHNKVGLTNNSPSSSPSDPLSEKSDPLETLLDVELKKMASFLGLENE* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01843 268 CDD SANT 70 111 IPR001005 -
Rops4g01843 268 SMART sant 12 62 IPR001005 -
Rops4g01843 268 SMART sant 65 113 IPR001005 -
Rops4g01843 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Rops4g01843 268 CDD SANT 15 60 IPR001005 -
Rops4g01843 268 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Rops4g01843 268 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Rops4g01843 268 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Rops4g01843 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Rops4g01843 268 MobiDBLite consensus disorder prediction 209 248 - -
Rops4g01843 268 MobiDBLite consensus disorder prediction 224 243 - -
Rops4g01843 268 MobiDBLite consensus disorder prediction 168 189 - -
Rops4g01843 268 FunFam MYB-related transcription factor 12 65 - -
Rops4g01843 268 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Rops4g01843 268 Gene3D - 69 147 - -
Rops4g01843 268 Gene3D - 10 66 - -
Rops4g01843 268 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Rops4g01843 268 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01843 Rops-Chr4 43059253 43060561 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01843 1 115 MYB Transcription Factor Family AT2G16720 64.655 9.07e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops4g01843 Myb_DNA-binding 7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01843 K09422 - gmx:547568 368.237