Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01842 ATGGGAAGAAGCCCTTGTTGTTCTAAGGAAGGCTTGAACAAAGGAGCATGGACAGCTATGGAAGACAAGATTCTCACTGAATACATTAATATTCATGGTGAAGGAAAATGGAGACACCTTCCCAAAAGAGCAGGTCTTAAGAGATGTGGCAAAAGTTGTAGGCTAAGATGGTTGAATTATCTAAGACCTGGCATTAAAAGAGGAAATATCACTGACGATGAAGAGGAGCTTATAATCAGGCTTCACAATCTTCTTGGAAACAGGTGGTCCTTGATTGCTGGACGGCTTCCAGGACGAACAGACAATGAAATCAAGAATTATTGGAATACCAATATTGGAAGGAAACTTCAAAATGGTACCCTAAACTGCTCCATTACAAGTGGTGCAAGAAGCTCATTGAACTCAGTTCAACATGATAGAAACATGAAAACCCAAGAGTGGCACCATCCTTATCCTCCAAATAAAGGTTCTTATGTGGTCCAAACTAAAGCAACAAGATGGACTAAGGTCACAGTCAATAAAGAAATTACTCAACAAAATGAAGTGATTGAGGGCAATGTGGTTGATAACAAAATGAAGGGATCACCAGTGTCATCATCATCACCTTCAGAGAATAACATTAATGATCCATTGGATTTCATGGCAGATTTTGAGATGGATGGCAACTTCTTTTCCGAGCTTCTCAAGATGGATTTACCAGAACTTTCTTCTTGTTTGGAAAATAATATAATGGAAGAAAATGGTGATAAAGGCCATTTATCTCCAAAATCATCCAATGATACCCACTTCACTTGGAGTGATTCATTGTATGACACAGGTTTTGATTTTCAACCAATGGCAAATTTTATGGAGTCTGGATTTGATTGGCTTTGA 873 0.3849 MGRSPCCSKEGLNKGAWTAMEDKILTEYINIHGEGKWRHLPKRAGLKRCGKSCRLRWLNYLRPGIKRGNITDDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNIGRKLQNGTLNCSITSGARSSLNSVQHDRNMKTQEWHHPYPPNKGSYVVQTKATRWTKVTVNKEITQQNEVIEGNVVDNKMKGSPVSSSSPSENNINDPLDFMADFEMDGNFFSELLKMDLPELSSCLENNIMEENGDKGHLSPKSSNDTHFTWSDSLYDTGFDFQPMANFMESGFDWL* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01842 290 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 228 - -
Rops4g01842 290 SMART sant 66 114 IPR001005 -
Rops4g01842 290 SMART sant 13 63 IPR001005 -
Rops4g01842 290 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops4g01842 290 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Rops4g01842 290 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Rops4g01842 290 CDD SANT 16 61 IPR001005 -
Rops4g01842 290 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops4g01842 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops4g01842 290 FunFam MYB-related transcription factor 13 66 - -
Rops4g01842 290 CDD SANT 71 112 IPR001005 -
Rops4g01842 290 Gene3D - 14 66 - -
Rops4g01842 290 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops4g01842 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops4g01842 290 Gene3D - 70 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01842 Rops-Chr4 43043333 43044697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01842 1 116 MYB Transcription Factor Family AT4G09460 75.862 3.10e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops4g01842 Myb_DNA-binding 9.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01842 K09422 - gmx:100809225 431.024