Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01841 ATGAGTAACTGGTTGGGGTTCTCTCTGACTCCACACTTGAGGATTGATGAAGAATTTGGGAGAGAAAACCAAGACCGTGGTGGAGGCTATCCTCCTCCACCTCCTCATCCTCACTTGTCTGTTATGCCTTTGCGCTCTGATGGTTCACTTTGTGTTGCTGAAGAATGGAGATATGATAATGCAATAGGTGGAGGAAATTCAAATGAAGAAGGTCCAAAGCTTGAAGACTTCTTGGGTTGTTACTCAAACTCACCCCTTGCTGAAACCAAAGTCTTTTGCCAAGGCTCACAACATGACCAAAACCAGAATAATATTTCCAAAATCAATGTTAACGTGGCACCACACTTTTGCACCAATCAAGAGATAGAAACTGGGGAGAATCTCACAAATTCATCTTCCTTGCTTCATTCTTTTCATGCCTATAATGATAACCCACATGCCCTCATCCAAAACAATAGCATGTACAAGTCTTGGTGGGCTCAAACTCAGTTTTCTGATGGAAAACCTTCGGCTGAGGCAAATGGGTGTAATTTCCAATCTTTGTCCTTGACTATGAGCCCAAGTGTACAAAATGGGGTAGGTGCAATTTCCCCCGTTAAAGTGAATGAAGACACTCGTAAAAGGTCCATGGCAAAACCTCATGCTAGAGAACCTGTCCCTCGCAAATCTATTGATACTTTTGGGCAGAGAACATCTCAATATCGTGGTGTTACAAGGCATAGATGGACTGGGAGATATGAGGCCCATTTATGGGATAATAGTTGCAGAAAAGAAGGGCAAACAAGGAAAGGAAGGCAAGAATATACTAACTGTCTGCTTCATGCACTGGTTGGATTCTTCTCCTTTCATGGCTGGCTTCTTCAAATCTTCACAGTTTACCTTGGTGGTTATGACAAGGAAGAAAAAGCAGCAAGGGCTTATGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAGAAGGAACTTGAAGAGATGAAGCACATGACCAGACAAGAATTTGTCGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGGGCTTCTGTGTACAGAGGCGTGACAAGGCACCATCAACATGGAAGGTGGCAGGCTCGGATAGGAAGAGTTGCAGGAAACAAGGACTTGTATCTTGGTACATTTAGCACACAAGAAGAGGCTGCTGAAGCATATGATATAGCAGCAATCAAGTTCCGGGGAACAAGTGCTGTGACCAACTTTGACATAAGTAGGTATGATGTGAAGAGAATTTGCTCAAGCTCAACTCTAATTGCAGGAGATCTTGCAAAACGGTCTCCTAAAGACCCAGCTCCTGCCACTACTGAGGACTTCAATTCATGTGGTTCATCAACACCTTCTCAGCCACCTCCTATGGCTATAACTGATGGTGAACATTCTGATGAGTTATCCAACATGGTGTGGAATGCCAACAGTGATGAGCAACCACAGATTGAGTGTGGAAACACCAATATCTCTGAATCATCACAGCAAGTTTCACCAACCACCAAGAATGCCATGAACCCTCAAAGTCCCAAGTGTTCTGTGGGACTTCCCAATGAGTTTGGAGTGAGTGGAGCAGATTATGGACATGGATACTTCAACCTGCATGGACCAAAATATGATGATGGAAACAATGAAAATGACCACATGAACAACAACAGGCTTGGAAATTTGGGTTTGGTTAATCAAGTTCCTATGTTTGCTTTATGGAATGAATGA 1749 0.4311 MSNWLGFSLTPHLRIDEEFGRENQDRGGGYPPPPPHPHLSVMPLRSDGSLCVAEEWRYDNAIGGGNSNEEGPKLEDFLGCYSNSPLAETKVFCQGSQHDQNQNNISKINVNVAPHFCTNQEIETGENLTNSSSLLHSFHAYNDNPHALIQNNSMYKSWWAQTQFSDGKPSAEANGCNFQSLSLTMSPSVQNGVGAISPVKVNEDTRKRSMAKPHAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQEYTNCLLHALVGFFSFHGWLLQIFTVYLGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKDPAPATTEDFNSCGSSTPSQPPPMAITDGEHSDELSNMVWNANSDEQPQIECGNTNISESSQQVSPTTKNAMNPQSPKCSVGLPNEFGVSGADYGHGYFNLHGPKYDDGNNENDHMNNNRLGNLGLVNQVPMFALWNE* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01841 582 FunFam AP2-like ethylene-responsive transcription factor 359 420 - -
Rops4g01841 582 PRINTS Ethylene responsive element binding protein signature 306 326 IPR001471 GO:0003700|GO:0006355
Rops4g01841 582 PRINTS Ethylene responsive element binding protein signature 234 245 IPR001471 GO:0003700|GO:0006355
Rops4g01841 582 SUPERFAMILY DNA-binding domain 359 420 IPR016177 GO:0003677
Rops4g01841 582 Gene3D AP2/ERF domain 360 420 IPR036955 GO:0003700|GO:0006355
Rops4g01841 582 Gene3D AP2/ERF domain 232 326 IPR036955 GO:0003700|GO:0006355
Rops4g01841 582 SMART rav1_2 233 330 IPR001471 GO:0003700|GO:0006355
Rops4g01841 582 SMART rav1_2 360 424 IPR001471 GO:0003700|GO:0006355
Rops4g01841 582 ProSiteProfiles AP2/ERF domain profile. 233 324 IPR001471 GO:0003700|GO:0006355
Rops4g01841 582 SUPERFAMILY DNA-binding domain 291 326 IPR016177 GO:0003677
Rops4g01841 582 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 69 499 - -
Rops4g01841 582 CDD AP2 359 420 IPR001471 GO:0003700|GO:0006355
Rops4g01841 582 CDD AP2 232 326 IPR001471 GO:0003700|GO:0006355
Rops4g01841 582 MobiDBLite consensus disorder prediction 452 467 - -
Rops4g01841 582 Pfam AP2 domain 359 410 IPR001471 GO:0003700|GO:0006355
Rops4g01841 582 ProSiteProfiles AP2/ERF domain profile. 360 418 IPR001471 GO:0003700|GO:0006355
Rops4g01841 582 MobiDBLite consensus disorder prediction 438 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01841 Rops-Chr4 43025215 43029189 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01841 1 443 AP2-EREBP Transcription Factor Family AT1G72570 50.737 2.26e-137 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops4g01841 AP2 2.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01841 K09285 - gmx:100809762 928.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01841 4 43025215 43029189 Rops4g01841 4 43025215 43029189 ECH