Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01839 ATGATGAGTGCAACTGCAAGAAATAGGTCCCCTTTCACAGCAACTCAGTGGCAAGAACTTGAACAACAAGCTCTTGTTTTTAAATACATGGTAACAGGAACTCCCATCCCACCAGATCTCATCTACTCTATTAAAAGAAGTCTAGACTCTTCAATATCTTCAAGACTCTTCCCACATCATCCCATTGGGTGGGGATGTTTTGAAATGGGTTTTGGCAGAAAAGTAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGCTCAAAGGAAGCATATCCAGACTCCAAGTACTGTGAAAGACACATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGTTTCTTCAGCAACAAGCACCGCCACAAACACCTCTCAAACAAACCCATCATCTTATAACAGAAACCTTTCCTTGGCCAACTCCAACATAACTTCACCCTCTTCTTTCCCTTTCTCTCCATTGCCTTCATCTTTGGCCTGTGAGTCTCAGCCCTTTTCCCAATCTTACCAAAACTCTTCTCTAAACCCCTTCTTTTACTCCCAATCAACCTCTTCTAGACCCCCAGATTCTGATTTTCCACCTCAAGATGCCACTACCCACCAACTATTCATGGATTCTGGGTCTTATTCTCAGGATGAAAAGGATTATAGTAGGCAAGTTCATGGAATAAGAGAAGGTGTGGATGAGAGAGCTTTCTTCCCAGAAGCTTCAGGGTCAGCTAGGAACTACCCTGAATCATATCAGCAACTCTCAATGAGCTCTTATAAGACCTATTCAAACTCCAACTTTCAGAACATCAATGATAATAACCCAAGACAACAAGAGCAACACTGCTTTGTTTTGGGTACTGACTTCAAATCAACAAGACAAAACAAAGAGAAAGAAACTGAGACAACTCAAAGACCGCTTCACCACTTCTTTGGTGGGGAGTGGCCACCAAAGAACACAGATTCCTGGCTAGATCTTGCTTCCAACTCCAGAATCCCAACCGATGAATGA 1017 0.4336 MMSATARNRSPFTATQWQELEQQALVFKYMVTGTPIPPDLIYSIKRSLDSSISSRLFPHHPIGWGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEVSSATSTATNTSQTNPSSYNRNLSLANSNITSPSSFPFSPLPSSLACESQPFSQSYQNSSLNPFFYSQSTSSRPPDSDFPPQDATTHQLFMDSGSYSQDEKDYSRQVHGIREGVDERAFFPEASGSARNYPESYQQLSMSSYKTYSNSNFQNINDNNPRQQEQHCFVLGTDFKSTRQNKEKETETTQRPLHHFFGGEWPPKNTDSWLDLASNSRIPTDE* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01839 338 MobiDBLite consensus disorder prediction 103 145 - -
Rops4g01839 338 MobiDBLite consensus disorder prediction 117 145 - -
Rops4g01839 338 MobiDBLite consensus disorder prediction 324 338 - -
Rops4g01839 338 ProSiteProfiles QLQ domain profile. 11 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Rops4g01839 338 Pfam QLQ 11 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Rops4g01839 338 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Rops4g01839 338 SMART QLQ_2 10 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Rops4g01839 338 PANTHER GROWTH-REGULATING FACTOR 5 10 324 IPR031137 GO:0005634|GO:0006351|GO:0032502
Rops4g01839 338 MobiDBLite consensus disorder prediction 182 206 - -
Rops4g01839 338 MobiDBLite consensus disorder prediction 294 338 - -
Rops4g01839 338 Pfam WRC 77 119 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01839 Rops-Chr4 42979171 42981358 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01839 9 317 GRF Transcription Factor Family AT3G13960 40.055 5.93e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Rops4g01839 WRC 1.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01839 - - gmx:100806024 573.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01839 4 42979171 42981358 Rops4g01839 4 42979171 42981358 ECH