Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01824 ATGACCATGGAACCAAACCCAACATCAGATCACATTCTGGACTGGCTTGAAGGTTCTGTTTCTTTCTTTCCATCATACTTGGATGATCCATATAACTCTGGTTACATCCAAGAGTACCAGTTGTGGGATCAGGGCCAAGATATAAGTAGCCAGTACCAAACTGATGCCAATACAGGTTCCCCTAATGCCACCAACAGTACTACCACCATTGTTGCTGCTGCTGCTGCTAGTACCACCAGCACAACATCCCTTGACCCTTATGGTTCTAACAACCTACCACTTTCTGATTTGCCCAAGAAACGAAATGCCACTGATGAATCAAATCTCAAACCATCACAAAACCACAAGCACAAGAGAATCAAGAGCCGTCCAATGAATGAAGCTGACAATGGAGATGCAGCTGTTGAAGGGACAATGGTTAGAAAATCTGGTGGGAACAAGAAAGGTGCAGGTAAAGCCAATGGAAATAACTGTAACAGTGGAATCAACAAGGAAGGTAGATGGGCTGAGCAGTTGCTCAACCCTTGTGCTGCAGCCATATCTGGTGGAAACCTGAATCGTGTACAACACCTCTTATATGTTCTCCATGAGCTAGCCTCACCTACTGGTGATGCAAACCACAGGCTTGCGGCACATGGTCTCAGAGCACTGACAAACCATCTATCCTCTTCTTCATCACCTACCTCTTCAGGGCCTATAACTTTTGCATCAACAGAACCACGGTTCTTCCAAAAGTCACTACTGAAGTTTTATGAGGTTAGCCCCTGGTTTTCCTTTCCTAATAACATAGCAAATGCTTCCATCCTTCAAGTTCTTGCTGAAGAGCCAAATAATTCACGTACCCTTCACATCCTTGACCTTGGGGTATCTCATGGTGTGCAATGGCCAACTTTTCTAGAGGCCTTGAGTCGTAGACCTGGTGGACCTCCTCCTCTTGTTCGCCTCACTGTGGTTACTGCTTCCTCCAATGAAAATGACCAAAATATGGAGACCCCATTTTCAATAGGTCCACCTGGTGATAACTTCTCTTCTAGACTCCTTGGCTTTGCTCAGACCATGAACATCAATTTGCAGATAAACAGGCTTGATAATCATCCTTTGCAGACATTAAACGCTCAAAGTATTGACACCACCCCGGATGAAACCTTCATTGTGTGTGCACAGTTTCGGCTGCACCACTTGAATCACAACACTCCTGATGAAAGAAGTGAGTTTCTGAAGGTGTTGAGAAAGATGGAGCCTAAAGGGGTGATATTAAACGAGAACAACATGGAATGTTGCTGCAATAGTTGTGGGAATTTTGCCACTGGGTTCTCCGGAAGAGTGGAGTACTTGTGGAGGTTTTTGGATTCAACCAGCTCAGCATTCAAGGGCCGTGAGAGTGATGAAAGAAGAGTAATGGAAGGTGAGGCTGCAAAAGCATTGACAAACAAGCGTGAGATGAATGAAGGGAAAGAAAAATGGTTTGAAAGAATGAAAGAAGCAGGGTTTGTAGGGGAAATATTTGGAGAGGATGCCATTGATGGAGCTCGAGCTTTGTTGAGGAAGTATGACAGTAACTGGGAGATGAAAGTAGAAGACAACAACACTAGTGTGGGACTATGGTGGAAGGGGCAGCCTGTTTCTTTCTGTTCTTTGTGGAAGCTGGATGGGAATGACCAGGGTAAGGCGAGGTAG 1677 0.4502 MTMEPNPTSDHILDWLEGSVSFFPSYLDDPYNSGYIQEYQLWDQGQDISSQYQTDANTGSPNATNSTTTIVAAAAASTTSTTSLDPYGSNNLPLSDLPKKRNATDESNLKPSQNHKHKRIKSRPMNEADNGDAAVEGTMVRKSGGNKKGAGKANGNNCNSGINKEGRWAEQLLNPCAAAISGGNLNRVQHLLYVLHELASPTGDANHRLAAHGLRALTNHLSSSSSPTSSGPITFASTEPRFFQKSLLKFYEVSPWFSFPNNIANASILQVLAEEPNNSRTLHILDLGVSHGVQWPTFLEALSRRPGGPPPLVRLTVVTASSNENDQNMETPFSIGPPGDNFSSRLLGFAQTMNINLQINRLDNHPLQTLNAQSIDTTPDETFIVCAQFRLHHLNHNTPDERSEFLKVLRKMEPKGVILNENNMECCCNSCGNFATGFSGRVEYLWRFLDSTSSAFKGRESDERRVMEGEAAKALTNKREMNEGKEKWFERMKEAGFVGEIFGEDAIDGARALLRKYDSNWEMKVEDNNTSVGLWWKGQPVSFCSLWKLDGNDQGKAR* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01824 558 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 140 536 IPR005202 -
Rops4g01824 558 ProSiteProfiles GRAS family profile. 160 548 IPR005202 -
Rops4g01824 558 MobiDBLite consensus disorder prediction 78 135 - -
Rops4g01824 558 MobiDBLite consensus disorder prediction 99 113 - -
Rops4g01824 558 Pfam GRAS domain family 170 548 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01824 Rops-Chr4 42760408 42762084 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01824 2 548 GRAS Transcription Factor Family AT3G13840 50.717 1.08e-180 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops4g01824 GRAS 9.3e-78 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01824 - - mtr:11434050 887.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01824 4 42760408 42762084 Rops4g01824 4 42760408 42762084 ECH
Rops4g01824 4 42760408 42762084 Rops7g00404 7 5111384 5112950 PCT