Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01823 ATGTCCTCGCAGGAACAAGCACTAGTTTCTCTTCTATCACAGCTAGCCCTATCCTTCGACGGTGCCGTTTTAGGTTTGGCCTTGGCCTACGCCGCCGTTCGCTCCGTTCTCAAATTCACCGCCACATCCGTCTCCCTCCGGAAGCTTCGCGACGCTCCTTCACTCTCCGTCTCCGACCTCCGGTCGCTTCTCGTCGATAACACCTCCGACGCCAATGGAAACTCCGACGATGGCAAAATCGTCGTTGTTCGCGGCACCGTCGACTCCAAGTCCGCCGTTGACGGCGGCTGGAAAACCTTGAGGCCCGGCGTCTTGGTTTCTCGTGAGTCCGGTGACAAAGCCGTTGTCCTTCAACGAACTCAAACGTGTATATACAATGAATGGAAGGGCTTACTTGGATGGACTTCTGATCTTCGAGCCATATTTGCAAGATCTTGGAGGCCACAAGAGTCTACATTCTTAAGAAAGGTGCCTTTTGTTCTCATTGATTTTGGTCGGCAGCCCAATTCTGAATATGTTGTTGTCAACTTGGATGGATCGAGACACGCATTACCTCTGACAACAGTTTATCATAAATTGCAACCCATAAATGCTTCTCCATATACTTTCTTGCAAGCACTTTTTGGGCATGAATATCCAGTTGGACTACTAGATGAAGAGAAAATTCTTCCCTTGGGGAAGGAGATTAGTGCTGTAGGCCTGTGTAGACTAAGAAATGGAATTGCTGAAATTAAGTCATGCAAGGATCTACCATATTTTCTGTCTGACTTGAGCAAAGATCAGATGATTGTAGATGTTTCCTTCAAAACAAAAATACTGTTTTGGAGTGGTATTATTCTTGGTTCAATGTCGGTTGGGGTCCTTGGCTATGCAGTTGTGAGGAACTGGAATAAGTGGAAGCAGTGGAAGCAACAGAGGCAGCTCCAGCAACAAAGGCAAACAGTCAGTAGCGATGTTGATCCTCAGCTGGAAGATGAGAATGAAGATGTTCCAGACGGACAATTATGTGTTATATGCCTGATGAGGAGAAGGCGTTCTGTTTTCATTCCATGTGGGCATCTTGTATGTTGCCAAGGGTGTGCAATCTCGGTTGAACGTGATGTGGCACCCAAATGTCCTGTTTGTCGTCAGGAGATTCGGGATTCGGTGCGGATTTATGAATCTTGA 1167 0.4713 MSSQEQALVSLLSQLALSFDGAVLGLALAYAAVRSVLKFTATSVSLRKLRDAPSLSVSDLRSLLVDNTSDANGNSDDGKIVVVRGTVDSKSAVDGGWKTLRPGVLVSRESGDKAVVLQRTQTCIYNEWKGLLGWTSDLRAIFARSWRPQESTFLRKVPFVLIDFGRQPNSEYVVVNLDGSRHALPLTTVYHKLQPINASPYTFLQALFGHEYPVGLLDEEKILPLGKEISAVGLCRLRNGIAEIKSCKDLPYFLSDLSKDQMIVDVSFKTKILFWSGIILGSMSVGVLGYAVVRNWNKWKQWKQQRQLQQQRQTVSSDVDPQLEDENEDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVERDVAPKCPVCRQEIRDSVRIYES* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01823 388 ProSiteProfiles Zinc finger RING-type profile. 336 376 IPR001841 -
Rops4g01823 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 388 IPR013083 -
Rops4g01823 388 CDD RING-HC_SPL2-like 331 377 - -
Rops4g01823 388 SUPERFAMILY RING/U-box 325 381 - -
Rops4g01823 388 Pfam Zinc finger, C3HC4 type (RING finger) 334 381 - -
Rops4g01823 388 Pfam E3 Ubiquitin ligase 142 288 IPR022170 GO:0004842|GO:0006996|GO:0016567
Rops4g01823 388 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 388 IPR044247 GO:0004842
Rops4g01823 388 SMART ring_2 336 375 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01823 333 385 C3H Transcription Factor Family AT3G06140 39.623 1.78e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01823 K15688 - gmx:100800058 619.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01823 4 42754563 42759443 Rops4g01823 4 42754563 42759443 ECH