Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01821 ATGCAAAAAATGCCTTCTAAGAAGCATCAATGGAGATCCTTGGTACTAGGTTGTTTCAAGGCCAAGCAAACTTCCTTGGAAACCCCAAACATAGTTTCAAAAAAGACTTCTTCAAGTAGAATTTCTCTATCTGATTTAAGCAATTATTCATCACTCACTATCATGAGTGATTTATCCAACTCTCTTGTGGGATCAAATCTTCATATTTTCACTTACCAGGAGCTTAAAGAGGTTACACACAATTTCAGCAAATCCAACTTTCTTGGGGAAGGTGGGTTTGGGAAGGTATACAAAGGGTTTATTGATGACAAACTTAGGCCTACACTGGCTGCTAAGGTTGTAGCAGTTAAGGCCTTAAACTTGGATGGAAAACAAGGTCATAGAGAGTGGTTGGCTGAAGTAATCTTCCTGGGGCAGTTGAAGCATCGCCATCTGGTTAATTTAATTGGCTATTGCTGTGAAGATGAGCACAGGCTTCTTGTGTATGAATACATGGAGAGGGGCAATCTAGAGGACAAGCTTTTCATAGGTTATTTAGCAACCTTGCCATGGCTAACAAGAATCAAAATAGCAATTGGGGCTGCAAAGGGGCTTGCTTTCCTTCATGAAGAAGAGAAACCAGTGATATATAGAGATGTTAAAGCCTCAAACATTCTATTGGATGCTGATTACAATGCCAAGCTCTCAGATTTCGGTTTAGCAATAGATGGACCAGAAAAAGATCAAACACATATTACAACTCGTGTGATGGGTACACATGGTTATGCTGCTCCTGAGTATATCATGTCAGGCCGTTTGACAACCATGAGTGATGTATATAGCTTTGGAGTTGTTCTCTTAGAACTACTCACAGGAAAGAAGTCAGTGGACAAGAAAAGACCCAGCAGAGAACAAGATTTGGTAGAATGGGCAAGGCCTTTATTGAAGGATTCACATAAACTTGAAAGAATAATGGATCCAAGACTTGAGGATCAGTACTCAATTGAAGGGGCTAGAAAGGTAGCAGCCTTGGCTTATCAATGTCTAAGCCAACATGATAAATGTAGGCCTACCATGAGAACAGTGGTTAAGACCTTAGAGCCTTTGATGAAATTGAAAGATATCCCAGTTGGCCATTTTGTTTATGTGGTACCAAGTGAAGTGGCCAATGAAGACTCACTCAAAGTGAATGAAAAAGGAGCAGAAAATGACCATGATAAGATCAAGAAAGGTGAGTTAAAAACTAAAGAAGAAGAAAAGGGAGAGAAAAAGGAGAAGGGTCACCACAGGCATAGAAAAAGTCGTGGCAATAGACGTAGAGTTAAGCCATTGAGGTCTCGTGCTGTTCATTCTGACACTGCTCTGTATAAGACTCTTGGCACAAGTTTGTATTCTCCAAAGCAAGCACCAGAAAAAGATGGACAAAGGCCAATATTAGCATGA 1422 0.403 MQKMPSKKHQWRSLVLGCFKAKQTSLETPNIVSKKTSSSRISLSDLSNYSSLTIMSDLSNSLVGSNLHIFTYQELKEVTHNFSKSNFLGEGGFGKVYKGFIDDKLRPTLAAKVVAVKALNLDGKQGHREWLAEVIFLGQLKHRHLVNLIGYCCEDEHRLLVYEYMERGNLEDKLFIGYLATLPWLTRIKIAIGAAKGLAFLHEEEKPVIYRDVKASNILLDADYNAKLSDFGLAIDGPEKDQTHITTRVMGTHGYAAPEYIMSGRLTTMSDVYSFGVVLLELLTGKKSVDKKRPSREQDLVEWARPLLKDSHKLERIMDPRLEDQYSIEGARKVAALAYQCLSQHDKCRPTMRTVVKTLEPLMKLKDIPVGHFVYVVPSEVANEDSLKVNEKGAENDHDKIKKGELKTKEEEKGEKKEKGHHRHRKSRGNRRRVKPLRSRAVHSDTALYKTLGTSLYSPKQAPEKDGQRPILA* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01821 473 ProSiteProfiles Protein kinase domain profile. 82 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01821 473 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 165 368 - -
Rops4g01821 473 CDD STKc_IRAK 88 362 - -
Rops4g01821 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Rops4g01821 473 Gene3D Phosphorylase Kinase; domain 1 29 164 - -
Rops4g01821 473 Gene3D Transferase(Phosphotransferase) domain 1 165 369 - -
Rops4g01821 473 PANTHER OS01G0588500 PROTEIN-RELATED 38 362 - -
Rops4g01821 473 MobiDBLite consensus disorder prediction 387 418 - -
Rops4g01821 473 FunFam Serine/threonine-protein kinase BIK1 49 164 - -
Rops4g01821 473 MobiDBLite consensus disorder prediction 387 473 - -
Rops4g01821 473 ProSitePatterns Protein kinases ATP-binding region signature. 88 117 IPR017441 GO:0005524
Rops4g01821 473 MobiDBLite consensus disorder prediction 419 438 - -
Rops4g01821 473 SMART serkin_6 82 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01821 473 Pfam Protein tyrosine and serine/threonine kinase 85 359 IPR001245 GO:0004672|GO:0006468
Rops4g01821 473 SUPERFAMILY Protein kinase-like (PK-like) 58 360 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01821 Rops-Chr4 42678875 42681102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01821 68 388 Glycoside Hydrolase AT3G07070 48.765 3.39e-101 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops4g01821 PK_Tyr_Ser-Thr 6.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01821 - - gmx:100790454 707.212