Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01820 ATGGCAATAGAATTGGCAGCTCCTAATTGGGCTTCAAACTATGCCACATGGCTTGCCACTGTTGCCGTCCTCCTCTTCATCGGCCGCAGTCTCCGCCGCCGGAATTATAACCTACCACCAGGCCCAAAACCATGGCCCATAATAGGGAATCTTAACCTTATTGGGCCTCTCCCTCACAGGTCCTTCTATGCTCTAAGCCAAAAATATGGATCCCTCATACATGTTTGGTATGGCTCCAAACATGTTGTGGTGGGCTCCTCCGTGGACATGGCAAAAGCCTTCCTCAAAACTCACGACGGCACGGTGGCAAGCCGGCCCAGATTCGCCGCCGGCAAGTACACAACCTACGAGTTCTCAGACATAACATGGTCCCCTTATGGTCCATATTGGAAACAAGCACGTAGAATGTGCAAAATGGAACTTTTCAGTGCCAAAAGACTCGAGTCCTTTGAGTATATAAGAAAGGAAGAGGTGCATGCACTCATGAATGAGTTTTTGAAAACTGCAAAACAAAGCTTCATGTTGAAAGACTATCTTTCAATTGAGGGGTTGAACATTATAAGTCACATGTTTTTGGGGAAGAGGTACATGGACAAGAGTGAGAATGGCATTGTTTCACCTGAGGAGTTTAGGGAGATGCTGGATGAGTTGTTTTTTCTTAATGGGGTTCTCAACATTGGGGACTATATCCCTTGGGTTGGTTTCTTGGACTTGCAGGGTTACATTAAGAGGATGAAAGGTATAAGCAAGAAGTTTGATAGGCTCATAGAGCATGTGTTGGAGGAACACAATGAGAGAAGGAAAGGGGTGAAGGATTCTGTAGCCAAAGACATGTTGGACGTGCTTTTGGACCTTGCTGATGATCCTACTCTTGAGGTCAAGTTTGGAAAGATTGGAGTTAAAGCTCTCACTCAGGACCTATTAGCAGCAGGAACAGAAACCTCTACTGTAGCCATAGAATGGGTAATCAGTGAGCTCTTGAGAAAGCCAGAGGTATTGAAGAAGGCTACAGAGGAGCTAGAGAGGGTGATAGGGAAAGAGAGATGGGTTGAAGAGAAGGACATTGTCAATTTACCTTACATTAATGCCATTGTGAAGGAATCAATGAGGCTACACCCCGTGTCACCAATGTTAGTGCCAAGGCTAACCATTGAGGACTTTAGTATTAATGGGTATGATATTCCCAAAGGGACACAGGTGTCAATCAATATTTGGGCTATTGGCAGAGATCCAACAATTTGGGACAACCCAAATGAATTCATGCCAGAGAGGTTTCTTGGTAAGGATATAGATATGATAGGCCATGACTTTGAGTTGTTGCCATTTGGTGCTGGTAGAAGGATGTGCCCTGGGTACTCTCTTGGCCTTAAGGTGGTTTTTGGAACTTTGGCTAATATGTTGCATGGATTTAATTGGTCTCTGCCTGATAATATGAAGAAAGAGGACTTGAGTATGGAGGAAACTTTTAAGCTGTCTATGCCTAAGAAAGTGCCTCTGGAAGTTGTTGTTGAGCCTAGACTTCCAAATCATCTTTATGCCCTCTGA 1545 0.4453 MAIELAAPNWASNYATWLATVAVLLFIGRSLRRRNYNLPPGPKPWPIIGNLNLIGPLPHRSFYALSQKYGSLIHVWYGSKHVVVGSSVDMAKAFLKTHDGTVASRPRFAAGKYTTYEFSDITWSPYGPYWKQARRMCKMELFSAKRLESFEYIRKEEVHALMNEFLKTAKQSFMLKDYLSIEGLNIISHMFLGKRYMDKSENGIVSPEEFREMLDELFFLNGVLNIGDYIPWVGFLDLQGYIKRMKGISKKFDRLIEHVLEEHNERRKGVKDSVAKDMLDVLLDLADDPTLEVKFGKIGVKALTQDLLAAGTETSTVAIEWVISELLRKPEVLKKATEELERVIGKERWVEEKDIVNLPYINAIVKESMRLHPVSPMLVPRLTIEDFSINGYDIPKGTQVSINIWAIGRDPTIWDNPNEFMPERFLGKDIDMIGHDFELLPFGAGRRMCPGYSLGLKVVFGTLANMLHGFNWSLPDNMKKEDLSMEETFKLSMPKKVPLEVVVEPRLPNHLYAL* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01820 514 FunFam Cytochrome P450 84A1 30 507 - -
Rops4g01820 514 PRINTS P450 superfamily signature 310 327 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01820 514 PRINTS P450 superfamily signature 363 374 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01820 514 PRINTS P450 superfamily signature 440 449 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01820 514 PRINTS P450 superfamily signature 449 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01820 514 ProSitePatterns EF-hand calcium-binding domain. 198 210 IPR018247 -
Rops4g01820 514 PANTHER CYTOCHROME P450 98A9 16 513 - -
Rops4g01820 514 Gene3D Cytochrome P450 31 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01820 514 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 442 451 IPR017972 GO:0005506|GO:0016705
Rops4g01820 514 Pfam Cytochrome P450 39 495 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01820 514 CDD CYP71_clan 70 499 - -
Rops4g01820 514 SUPERFAMILY Cytochrome P450 39 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01820 514 PRINTS E-class P450 group I signature 449 472 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01820 514 PRINTS E-class P450 group I signature 403 427 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01820 514 PRINTS E-class P450 group I signature 362 380 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01820 514 PRINTS E-class P450 group I signature 182 200 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01820 514 PRINTS E-class P450 group I signature 319 345 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01820 514 PRINTS E-class P450 group I signature 439 449 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01820 514 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops4g01820 514 PRINTS E-class P450 group I signature 299 316 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01820 Rops-Chr4 42672171 42674156 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01820 18 514 Cytochrome P450 AT5G07990 40.828 1.36e-136 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01820 K20623 - gmx:100790480 765.763