Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01804 ATGGCCATAGCTAAGGCAATTCTCCATCCAACTCTCTTCTTCATCATCATCATAATCCCTTTGCCTGTGACATATTCCATGTCAGAAACTGAAGCTTTGTTGAGTCTAAAAAACTCATTCTCCAATGCTGAAGCTCTTGAAAGTTGGGTGGCTGATTCTATACCTTGTACTGAAGATGAACAATGGGAAGGTGTTATTTGCTACAATGGTTTGGTCACAGGACTTCGCCTTGAAGGAATGGGGTTATTAGGGGAAATAGATGTTGATGCATTGCTTGAACTAAAGGGTCTTAGAACTCTAAGCTTTAAGGACAATTCTTTCTCAGGTTCCATCCCACAACTCAATCGAATAGGTTTCTTGAAAGCAATGTATTTGTCAGGAAATAAGTTTTCAGGAGATATTCCTCATGAATACTTCAAAAACATGAGGTCTTTGAAGAAATTGTGGCTATCTGACAATGAATTCACAGGGAAGATTCCATCATCAATGGCTCAGCTTCCTCAACTTTTGGAGTTACATCTAGAAAACAACCAGTTTAGTGGAAGTATTCCAAAGTTTGACAACCCTTCGTTGGTGAAATTCAATGTGTCAAATAACAAATTGGAAGGTGAAGTCCCAACTAGTTTGTTGAAATTCAATGAGAACTCTTTTGCAGGGAATTCTGGTATTTGTGGTGACAAGTTTGGCAAAACATGTGAAAAGTCAATGGAGTCTCCAAATCCCATTGATGCACAAAAAAATGCTGAGCCTGGTGATGTGTCTGAGACAAATAGGAGTAGGAGTAGTGCATTGCAGATAGTAGGCATTGTTGTAACGTGTTTAGTACTTATCACACTTGTTGTCTTTATCATTGTGAGATCAAGGAAAAAGAAGTGTGAGAATGTTGATAAAATTGGAGAAGAAATTAATGAAGATGCATTTGAAGTTCAAGTAACTGCTCCAGTGAAAAGAGATGTGGATACAGTGAAAAAAACATCATCCAGCAGAAAGGGATCAACTTCACATGGTAAGGGCATTGGAGAACTTGGGATGTTGAATGATGAGAAGGCTGGTTTTGCATTGCCTGATTTGATGAAAGCAGCTGCAGAAGTGCTTGGAAATGGAGGATTAGGATCTTCTTACAAAGCTGTGCTGACTAATGGGGTGGCAGTGGTGGTGAAAAGGACCAGAGAGATGAATGCACTGGATAAAGATAGCTTTGATGCTGAGATGAGGAAGCTTGGAAAGCTAAAACATTGGAATATCTTGACCCCTTTAGCTTATCATTTCAGAAAGGATGAGAAACTAGTGATCTCTGAGTATGTTCCCGGAGGCAGTCTTCTATATTTGCTGCATGGTGATAGGGGACCATCACATGCTGAACTGGATTGGCCTACTCGTTTTAAGATTGTACATGGAATTGCTGATGGGATGCGTTATCTTCACTCTGAACTTGCTTCATCTGATCTACCACATGGCAATCTCAAGTCCAGTAATGTTCTCCTAGGACCAGATTATGAACCACTGCTTGTAGATTACGGGTTTGTCCATTTGGTTAACCCTGCAAGTGTCTCAACTGCGCTATTTGCTTATAAGGCTCCTGAAGCAGCACAACATGGCCAAGTTTCACGTAGTTGTGATGTTTATTGTCTTGGGGTAGTGATACTTGAGATACTCACTGGAAAATTCCCTTCTCAATATCTTAGCAATGGAAAGGGTGGAATTGATGTAGTGCAATGGGTTGTATCAGCAATATCTGAGGGAAGGGAATCAGAACTACTTGATCCTGAAATTGCAAGCTCTAGGAATAATTCACTAGGTGAAATGGAGCAACTCCTTCATATTGGTGCTGCTTGCACTGAAAGTAACCCAAAGCAACGACTAGACATGGTGGAAGTTGTTAGAAGGATAGAGGATATAAGAAACAAGGGTGGTCAAGAATCAAGCACTATAGAGGTCTTACAATCTCCTAGAGATGGGCACGGTGACCAATCACAGAGGATATGA 1986 0.4053 MAIAKAILHPTLFFIIIIIPLPVTYSMSETEALLSLKNSFSNAEALESWVADSIPCTEDEQWEGVICYNGLVTGLRLEGMGLLGEIDVDALLELKGLRTLSFKDNSFSGSIPQLNRIGFLKAMYLSGNKFSGDIPHEYFKNMRSLKKLWLSDNEFTGKIPSSMAQLPQLLELHLENNQFSGSIPKFDNPSLVKFNVSNNKLEGEVPTSLLKFNENSFAGNSGICGDKFGKTCEKSMESPNPIDAQKNAEPGDVSETNRSRSSALQIVGIVVTCLVLITLVVFIIVRSRKKKCENVDKIGEEINEDAFEVQVTAPVKRDVDTVKKTSSSRKGSTSHGKGIGELGMLNDEKAGFALPDLMKAAAEVLGNGGLGSSYKAVLTNGVAVVVKRTREMNALDKDSFDAEMRKLGKLKHWNILTPLAYHFRKDEKLVISEYVPGGSLLYLLHGDRGPSHAELDWPTRFKIVHGIADGMRYLHSELASSDLPHGNLKSSNVLLGPDYEPLLVDYGFVHLVNPASVSTALFAYKAPEAAQHGQVSRSCDVYCLGVVILEILTGKFPSQYLSNGKGGIDVVQWVVSAISEGRESELLDPEIASSRNNSLGEMEQLLHIGAACTESNPKQRLDMVEVVRRIEDIRNKGGQESSTIEVLQSPRDGHGDQSQRI* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01804 661 MobiDBLite consensus disorder prediction 637 661 - -
Rops4g01804 661 SUPERFAMILY Protein kinase-like (PK-like) 363 630 IPR011009 -
Rops4g01804 661 Pfam Protein kinase domain 363 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01804 661 SUPERFAMILY L domain-like 26 212 - -
Rops4g01804 661 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Rops4g01804 661 MobiDBLite consensus disorder prediction 320 342 - -
Rops4g01804 661 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 14 637 IPR046959 -
Rops4g01804 661 Pfam Leucine rich repeat 120 179 IPR001611 GO:0005515
Rops4g01804 661 FunFam Nuclear pore complex protein NUP107 26 185 - -
Rops4g01804 661 Gene3D Transferase(Phosphotransferase) domain 1 435 650 - -
Rops4g01804 661 ProSiteProfiles Protein kinase domain profile. 359 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01804 661 Gene3D Ribonuclease Inhibitor 22 117 IPR032675 -
Rops4g01804 661 Gene3D Phosphorylase Kinase; domain 1 322 434 - -
Rops4g01804 661 Gene3D Ribonuclease Inhibitor 120 234 IPR032675 -
Rops4g01804 661 MobiDBLite consensus disorder prediction 639 654 - -
Rops4g01804 661 MobiDBLite consensus disorder prediction 235 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01804 Rops-Chr4 42353638 42356067 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01804 13 633 Receptor kinase-like Gene Family AT3G42880 46.022 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Rops4g01804 Pkinase 5e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01804 - - gmx:100809208 879.396