Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01803 ATGTCAACTTTTCCTAATACGGTGGCAGATAGCCGGAGATCCGGCAAGGCACCGGAAAAATCCAATTTTTCTCAGACTTGTAGTCTCTTGAGTCAGTTGTTGAAGGAGAAGCGTGGTTCTGGAGATTCTACACTTGGAATTGGTGAGAAAATGGAGGCTAAAGCAAGTACAAAGGATTTGTCAGCCAACATGCAAAACTCAGATAGGGGTTTGAGATTGAATGCTTCTGCTATGGATTTTCTTCCACAACTTGTGGAAAACCCCTGCATCAAGAAGTCTAATGTTAGATCATCAGGGCCTGAAACTCCTCAATTGACTATATTCTATGCTGGAAAAATGTTAGTATTTGATGCTTTTCTACCTGAAAAAGCAACAGAGGTCATGGAATTGGCCACCAAGTTAGCTTCTGATAGTCCCAGCACTGAAGAAAAACCCCTCAGTCCCTCAGTCACTACTGAAAAATTGAAGGAATCCAAAGTACCTCAGACAAACTGTGTCACAGAAACCCCACCTAGACCAGGAAACCAAGCTGTTGGTTCAGATATGAGGTATCCAAGGAGAGCTTCACTTCTAAAATTTCTTGAGAAAAGGAAAGAAAGGGTTATTGCTAGAGGACCTTATCAAATTAACAACCCAAAGCAAGAGGGTAGCAGTTCAGGAGGTGAACCTGAAGATCAGTGTTCAAAACACTTTGACCTTAACTTGTAG 708 0.4195 MSTFPNTVADSRRSGKAPEKSNFSQTCSLLSQLLKEKRGSGDSTLGIGEKMEAKASTKDLSANMQNSDRGLRLNASAMDFLPQLVENPCIKKSNVRSSGPETPQLTIFYAGKMLVFDAFLPEKATEVMELATKLASDSPSTEEKPLSPSVTTEKLKESKVPQTNCVTETPPRPGNQAVGSDMRYPRRASLLKFLEKRKERVIARGPYQINNPKQEGSSSGGEPEDQCSKHFDLNL* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01803 235 SMART tify_2 98 133 IPR010399 -
Rops4g01803 235 MobiDBLite consensus disorder prediction 135 174 - -
Rops4g01803 235 MobiDBLite consensus disorder prediction 210 224 - -
Rops4g01803 235 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 12 217 IPR040390 -
Rops4g01803 235 Pfam tify domain 100 131 IPR010399 -
Rops4g01803 235 MobiDBLite consensus disorder prediction 202 235 - -
Rops4g01803 235 ProSiteProfiles Tify domain profile. 98 133 IPR010399 -
Rops4g01803 235 Pfam Jas motif 186 208 IPR018467 -
Rops4g01803 235 MobiDBLite consensus disorder prediction 1 24 - -
Rops4g01803 235 MobiDBLite consensus disorder prediction 135 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01803 Rops-Chr4 42334810 42336770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01803 8 217 Tify Gene Family AT1G19180 33.054 1.80e-23 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Rops4g01803 tify 1.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01803 K13464 - gmx:100778559 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01803 4 42334810 42336770 Rops4g01803 4 42334810 42336770 ECH