Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01802 ATGCAGAATCACAGGTTGAAGCAGCAAGCTTTGATGCAACAAGCTCTTCTTCAACAACAGTCTCTTTACCACCCTGGCCTCTTAGCTCCTCCTCAGATTGAACCAATCCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTGGGGAACATCCATACCCAGGTGACTGAGCCACTTTTGCAAGAAGTTTTTGCTGGTACTGGCCCAGTTGAAGGTTGTAAACTTATTAGAAAGGAAAAGTCATCCTATGGATTCATTCATTACTTTGATCGTAGATCTGCTGCTCTTGCCATATTATCTCTCAATGGAAGGCATCTATTTGGGCAGCCTATCAAAGTTAACTGGGCATATGCTAGTGGTCAGAGAGAGGACACATCAGGCCATTACAACATATTTGTTGGTGATCTCAGTCCTGAGGTTACTGATGCTACACTGTTTGCATGCTTTTCTGTCTACCCCAGTTGTTCAGATGCAAGGGTCATGTGGGATCAGAAGACTGGGCGTTCAAGGGGTTTTGGATTTGTTTCATTCCGTAATCAACAGGACGCTCAAAGTGCTATAAATGACTTGACTGGTAAGTGGCTTGGAAGTAGACAAATACGCTGCAATTGGGCGACAAAAGGTGCTGGTGGCAATGAAGAGAAGCAAAACTCAGATGCCAAAAGTGTGGTGGAACTAACAAATGGATCATCTGAAGATGGTAAAGAGATGTCTAACAGTGATGCTCCTGAGAACAATCCTCAATATACTACTGTTTATGTGGGCAACCTTGCTCCAGAGGTAACTCAGCTGGATCTGCATCGCCACTTCCATGCTCTTGGAGCTGGAGTAATAGAGGAGGTTCGTGTCCAGCGTGATAAAGGATTTGGTTTTGTGAGGTACAGTACTCATGCTGAAGCAGCTCTGGCCATTCAGATGGGGAATGCCCAGTCTATTCTCTCTGGCAAACAAATTAAGTGCTCCTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCTCTTCCCCCACCTACTGCTGCATCACTGCCAGGCCTCTCTGCAAACGATCTTTTGGCCTACGAGCGACAGCTGGCAATGAGCAAGATGGGTGGTATGCATGCCTTGATGCATCCTCAAGGACAACATCCTCTTAAACAGGCAGCAGCAATTGGAGCAAGCCAGGCTATATATGATGGTGGATTCCAGAATGTTGCAGCTGCACAGCAAATGATGTACTACCAGTAA 1251 0.4644 MQNHRLKQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFAGTGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDAKSVVELTNGSSEDGKEMSNSDAPENNPQYTTVYVGNLAPEVTQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSILSGKQIKCSWGSKPTPPGTASNPLPPPTAASLPGLSANDLLAYERQLAMSKMGGMHALMHPQGQHPLKQAAAIGASQAIYDGGFQNVAAAQQMMYYQ* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01802 416 SUPERFAMILY RNA-binding domain, RBD 130 220 IPR035979 GO:0003676
Rops4g01802 416 CDD RRM1_PUB1 53 123 - -
Rops4g01802 416 FunFam Oligouridylate-binding protein 1C 234 336 - -
Rops4g01802 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 214 IPR000504 GO:0003723
Rops4g01802 416 SUPERFAMILY RNA-binding domain, RBD 246 340 IPR035979 GO:0003676
Rops4g01802 416 FunFam oligouridylate-binding protein 1B-like isoform X2 1 133 - -
Rops4g01802 416 Gene3D - 235 336 IPR012677 -
Rops4g01802 416 Gene3D - 134 234 IPR012677 -
Rops4g01802 416 Gene3D - 1 133 IPR012677 -
Rops4g01802 416 SMART rrm1_1 258 328 IPR000504 GO:0003723
Rops4g01802 416 SMART rrm1_1 52 121 IPR000504 GO:0003723
Rops4g01802 416 SMART rrm1_1 137 210 IPR000504 GO:0003723
Rops4g01802 416 SUPERFAMILY RNA-binding domain, RBD 35 129 IPR035979 GO:0003676
Rops4g01802 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 257 332 IPR000504 GO:0003723
Rops4g01802 416 MobiDBLite consensus disorder prediction 217 256 - -
Rops4g01802 416 MobiDBLite consensus disorder prediction 329 348 - -
Rops4g01802 416 MobiDBLite consensus disorder prediction 214 256 - -
Rops4g01802 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 125 IPR000504 GO:0003723
Rops4g01802 416 CDD RRM2_PUB1 135 214 - -
Rops4g01802 416 FunFam oligouridylate-binding protein 1-like isoform X2 134 229 - -
Rops4g01802 416 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 49 335 - -
Rops4g01802 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 208 IPR000504 GO:0003723
Rops4g01802 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 119 IPR000504 GO:0003723
Rops4g01802 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 259 324 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01802 Rops-Chr4 42318161 42323461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01802 134 325 Eukaryotic Initiation Factors Gene Family AT1G49760 27.692 4.62e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01802 K13201 - gmx:100781227 806.979