Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01797 ATGGCGACCAAAGATTCACCATTGGAGATGCACGAAATTAGCAGCGATTCTGAGGGAACCGACCCTGGTTCGGACTGGGACGATTCTGAGGGAGACCCCGATTACGACATGCTCGAAGAAACCCATAGAACCTTCTCGAACCTCTCACTCATGAACAAGTCGAAACCGCGCGTTGTTGAAGTTAAGGGTCTGTCTACTGAGATAGACCCAGAACCTTCTCTTGATGAGAATTTTGAAAAAGTTCAGAACACAATAAAAGAGGGAATGGTAGAGAAATTGAAAGTGGATGAATGCAAGCTGTATTTGAGGAAGAACGGTTTAAGGCTTACTGGAAATAAGGACACACTCATCCAGCGGATAAAGGAGCATCTAGAGATTATAAATGGTGGAGGGGAGAAAAGGTACCCACCTTCTAGCTTTGTGTTGAATTGTAAAGGTGATGCATGCACTGGTGATGTTGTTTTGTTTGAGCAAAATGTCTATGAAATGTTCAACATAGCATCCAGGAGTGCAAGTGGTCCACCTTGTGGCAAAAGGATTGTTGCAGGTCGCATAGTGAAAGAAAGCTATGGTGCTGCCAAACAACAGCATACATTTACGATTGAAGTACTCTGGAGCAAGGGAGAAAAGCCTCTCCCTCCCCTTTACCCTCTGCTGATTAAGGGTAGAAACCTTTATAGGTTGAAGACTTTGAGACAGAAATGGGAGGATGAAGGGAAAAGGCAGAAAATATTGATGGAAAAACACTCAAGGGGATCTGTTGCCAGGGCAGATAGAGAAGCAAGGATACAAGAAAAGGAGAAGAGAAAAAAAATTAGGGAAAATAGGATTTCCAAAAAGGATCCAGCAAGGAACCAATGTCAATCACTTTCACGCATTGCAGTGTCTCAATATCAACCTCAAGAAACAGACATATCCATTAATCCAGAAAAGCCAGAATTTCCTTCTCAAAATTCAGGTTTCTCTGCCAATACAAGAAAGGAAACATCTGCCATTGTAAATAAACCAGCAGCTGTAACTGAACAGCATGTTAAGGCTGTTGAATCTAATACCATGGCAATGGGATCTAGACAGTTTGGAAATTCAGGAAAAACATCATTTACTGTTCACCACATGCATAATCAGCAAACTTGGAAGCAATCAGTTGATTGTTATCATATGAGGGGAGCTGAACTTTTAGCAAACTACAATTGCATTGACTTCCAATCCAGAGAGAAGTACCACCCTTTCATTGCTGAGACAAACAGATTTACAGAGAGGACTTACCATAGGAAGCCTTTGGCAAGTGCAAATCACTTTCATCCATTGATGCCTTACGGAGAAAGCTATAAGCAGAAACAGCTGTGTAGACATTATTCACGTGGGAGGTGCCATTTTGGAGACAACTGCAAATTCTTACATGATTTGAGAGACAAAAGGAACGTATGA 1428 0.4181 MATKDSPLEMHEISSDSEGTDPGSDWDDSEGDPDYDMLEETHRTFSNLSLMNKSKPRVVEVKGLSTEIDPEPSLDENFEKVQNTIKEGMVEKLKVDECKLYLRKNGLRLTGNKDTLIQRIKEHLEIINGGGEKRYPPSSFVLNCKGDACTGDVVLFEQNVYEMFNIASRSASGPPCGKRIVAGRIVKESYGAAKQQHTFTIEVLWSKGEKPLPPLYPLLIKGRNLYRLKTLRQKWEDEGKRQKILMEKHSRGSVARADREARIQEKEKRKKIRENRISKKDPARNQCQSLSRIAVSQYQPQETDISINPEKPEFPSQNSGFSANTRKETSAIVNKPAAVTEQHVKAVESNTMAMGSRQFGNSGKTSFTVHHMHNQQTWKQSVDCYHMRGAELLANYNCIDFQSREKYHPFIAETNRFTERTYHRKPLASANHFHPLMPYGESYKQKQLCRHYSRGRCHFGDNCKFLHDLRDKRNV* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01797 475 Coils Coil 254 274 - -
Rops4g01797 475 Gene3D - 439 475 - -
Rops4g01797 475 MobiDBLite consensus disorder prediction 1 37 - -
Rops4g01797 475 SUPERFAMILY SAP domain 79 125 IPR036361 -
Rops4g01797 475 Gene3D SAP domain 76 135 IPR036361 -
Rops4g01797 475 PANTHER SAP DOMAIN-CONTAINING PROTEIN 16 470 - -
Rops4g01797 475 MobiDBLite consensus disorder prediction 21 35 - -
Rops4g01797 475 ProSiteProfiles SAP motif profile. 90 124 IPR003034 -
Rops4g01797 475 Pfam CCCH-type zinc finger 448 468 IPR041367 -
Rops4g01797 475 MobiDBLite consensus disorder prediction 298 323 - -
Rops4g01797 475 SMART c3hfinal6 444 469 IPR000571 GO:0046872
Rops4g01797 475 MobiDBLite consensus disorder prediction 249 285 - -
Rops4g01797 475 SUPERFAMILY CCCH zinc finger 444 468 IPR036855 GO:0046872
Rops4g01797 475 SMART sap_9 90 124 IPR003034 -
Rops4g01797 475 MobiDBLite consensus disorder prediction 249 281 - -
Rops4g01797 475 ProSiteProfiles Zinc finger C3H1-type profile. 443 470 IPR000571 GO:0046872
Rops4g01797 475 Pfam SAP domain 91 124 IPR003034 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01797 Rops-Chr4 42224740 42227989 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops4g01797 SAP 9.6e-10 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01797 - - gmx:100815642 625.55