Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01790 ATGGCTAATGAAGGAGACAAAAGCAATGACTTCTATGCGATCTTGGGCTTGAATAAGGAGTGCACTGAATCAGAGCTAAGGAATGCTTATAAGAAACTTGCACTGAAATGGCACCCAGATCGTTGTTCAGCCTCAGGGAATTTGAAGTTTGTGGAAGAAGCTAAGAAGAAATTCCAGGCAATTCAGGGAGCCTATTCTGTTTTATCTGACGCGAACAAAAGGTTAATGTACGACGTAGGAGTCTACGACAGTGATGACGACGAAATGGGTATGGGGGACTTCTTGAACGAAATGGTAACAATGATGAGTCACACTAAAGCAAATGAAAATGGAGAGGAGAGCTTTGAGGAGTTGCAACAGCTGTTTGAAGATATGTTTCAAGCAGATATTGGATTAGATGGAAGCACCTCTCTTACTGCTGCTGGTTGCAATACTTCATCTGCTTACGTGACTTATAGTGAAAGTTCTAATTCAAATAAACGCAATTCCACTGAGATGAATTATGGGAAGGCAGAGGATTCTTCTGATTTCAATGCCAATTACCAGAACTTCTGTTTTGGGGTGAAGCACCTCCAAGATATAGAGAAGGGAAAAGGGGGAATTCCAGAAGGAGGAAGTAGCAGTAGACATAGAAATGGCAGAAAGCAAAAAATCTCATATGGCCATGATGTTTCCTCTAATGACTACCCTGGAATTTCTGCTAATTAA 708 0.411 MANEGDKSNDFYAILGLNKECTESELRNAYKKLALKWHPDRCSASGNLKFVEEAKKKFQAIQGAYSVLSDANKRLMYDVGVYDSDDDEMGMGDFLNEMVTMMSHTKANENGEESFEELQQLFEDMFQADIGLDGSTSLTAAGCNTSSAYVTYSESSNSNKRNSTEMNYGKAEDSSDFNANYQNFCFGVKHLQDIEKGKGGIPEGGSSSRHRNGRKQKISYGHDVSSNDYPGISAN* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01790 235 CDD DnaJ 10 70 IPR001623 -
Rops4g01790 235 ProSiteProfiles dnaJ domain profile. 10 81 IPR001623 -
Rops4g01790 235 PRINTS DnaJ domain signature 12 30 IPR001623 -
Rops4g01790 235 PRINTS DnaJ domain signature 30 45 IPR001623 -
Rops4g01790 235 PRINTS DnaJ domain signature 73 92 IPR001623 -
Rops4g01790 235 PRINTS DnaJ domain signature 53 73 IPR001623 -
Rops4g01790 235 SMART dnaj_3 9 73 IPR001623 -
Rops4g01790 235 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Rops4g01790 235 SUPERFAMILY Chaperone J-domain 8 94 IPR036869 -
Rops4g01790 235 Pfam DnaJ domain 10 78 IPR001623 -
Rops4g01790 235 Gene3D DnaJ domain 7 135 IPR036869 -
Rops4g01790 235 MobiDBLite consensus disorder prediction 219 235 - -
Rops4g01790 235 PANTHER PUTATIVE, EXPRESSED-RELATED 2 184 - -
Rops4g01790 235 MobiDBLite consensus disorder prediction 196 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01790 Rops-Chr4 42141109 42144862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01790 12 78 C2H2 Transcription Factor Family AT1G74250 41.791 5.72e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01790 - - lang:109338829 377.096