Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01782 ATGGCCGCCACTACGAACGCCGCCGCACCGCCACGTCAGCTGTCACAGAAGGAAGCCGACATCCAAATGATGTTGGCCGCCGACGTCCATCTCGGTACCAAAAATTGCGACTTCCAAATGGAACGCTACATCTTCAAACGCCGCAACGACGGTATTTACATTATCAATTTGGGTAAGACTTGGGAGAAGCTTCAACTTGCTGCTAGGGTTATAGTTGCCATTGAGAACCCACAGGACATCATTGTTCAATCTGCTAGGCCTTATGGGCAAAGAGCAGTGCTCAAGTTTGCTCAGTACACTGGGGCTCATGCTATTGCTGGAAGGCACACTCCTGGTACCTTCACCAATCAGCTCCAAACTTCATTCAGTGAGCCACGTCTTCTTATCCTCACTGATCCAAGAACTGATCATCAGCCTATCAAGGAAGCTGCCCTTGGAAATATTCCAACTATTGCTTTCTGTGACACTGATTCACCTATGCGGTATGTTGACATTGGAATTCCTGCTAACAATAAGGGGAAACATAGCATAGGTTGTCTCTTTTGGCTTCTTGCAAGGATGGTGTTGCAGATGCGTGGTACTATTCGCCCTGGTCTCAAGTGGGACGTCATGGTGGATTTATTCTTCTATAGAGAACCTGAGGAGGCCAAGCAGCAAGAGGAGGAAGAAGCTCCTGCACCAGATTATGCCATTGCAGATTTCAATGCTGCTGCTATTCCTGCTGATGGCCAGTGGCCTGCTGCAAATGATCAATCATGGGCTGATCCAGTTCCACAACCTATTCCAGCAGTTCCTGGTGTCAACTGGGCAGCAGCCCCAGAAACTGTTTCCGCTGCGACAGGAGACTGGGGTGAAGCTGTTGCACCACCACCACCACCACAACAACAAATTCCTGCTCCTGTAGTTGAATCTGTCCAAGCGACTGGCTGGGATTAA 936 0.4936 MAATTNAAAPPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEAPAPDYAIADFNAAAIPADGQWPAANDQSWADPVPQPIPAVPGVNWAAAPETVSAATGDWGEAVAPPPPPQQQIPAPVVESVQATGWD* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01782 311 NCBIfam 30S ribosomal protein S2 16 212 IPR005707 GO:0003735|GO:0006412|GO:0015935
Rops4g01782 311 Gene3D - 20 226 - -
Rops4g01782 311 CDD RPS2 24 190 IPR001865 GO:0003735|GO:0005840|GO:0006412
Rops4g01782 311 Hamap 40S ribosomal protein SA [rps-0]. 8 272 IPR027498 GO:0003735|GO:0006412|GO:0015935
Rops4g01782 311 PRINTS Ribosomal protein S2 signature 21 39 IPR001865 GO:0003735|GO:0005840|GO:0006412
Rops4g01782 311 PRINTS Ribosomal protein S2 signature 142 153 IPR001865 GO:0003735|GO:0005840|GO:0006412
Rops4g01782 311 PRINTS Ribosomal protein S2 signature 163 177 IPR001865 GO:0003735|GO:0005840|GO:0006412
Rops4g01782 311 PRINTS Ribosomal protein S2 signature 100 117 IPR001865 GO:0003735|GO:0005840|GO:0006412
Rops4g01782 311 PRINTS Ribosomal protein S2 signature 125 142 IPR001865 GO:0003735|GO:0005840|GO:0006412
Rops4g01782 311 PRINTS Ribosomal protein S2 signature 51 60 IPR001865 GO:0003735|GO:0005840|GO:0006412
Rops4g01782 311 MobiDBLite consensus disorder prediction 273 311 - -
Rops4g01782 311 ProSitePatterns Ribosomal protein S2 signature 2. 125 149 IPR018130 GO:0003735|GO:0005840|GO:0006412
Rops4g01782 311 PANTHER 40S RIBOSOMAL PROTEIN SA 11 293 IPR005707 GO:0003735|GO:0006412|GO:0015935
Rops4g01782 311 SUPERFAMILY Ribosomal protein S2 16 206 IPR023591 -
Rops4g01782 311 Pfam Ribosomal protein S2 123 188 IPR001865 GO:0003735|GO:0005840|GO:0006412
Rops4g01782 311 Pfam Ribosomal protein S2 24 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Rops4g01782 311 FunFam 40S ribosomal protein SA 20 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01782 Rops-Chr4 42084896 42086992 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01782 3 283 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 74.126 3.21e-153 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01782 K02998 - gmx:548014 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01782 4 42084896 42086992 Rops4g01782 4 42084896 42086992 ECH