Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01772 ATGTGTGGAGGTGCTATTATCTCCGACTTCATCCCGGCGGCGACTGCTGGGTCCCGCCGCGTCACCGCCGACATCCTTTGGCCTAATTTGAGGAAACCCAGTTCGAGGAAGCAGAAGCAGTTCTCGAAGCCACTGTTTTCGTTGGACGATGATGACTTCGAGGCTGGTTTCAGAGAATTCAAGGATGATTCTGACTTCGAAGATGACGAGGATGATTATGATGATGACTTGTTTGTTGGTGTTAAGAAGCCCTTTGCTTTTGCTTCCACCAAGACCAAACCTTCCAAGTCCCTCTCTCGGGTATCGACGGCTGCAAAAGCTGGGGAATCAGATGAGCAGGCTGAGAAGTCTGCCACGAGAAAGAGGAAGAATCAGTTTAGGGGGATCCGTCAGCGTCCATGGGGAAAATGGGCAGCTGAGATCAGGGACCCAAGGAAGGGGTCTCGTGTTTGGCTTGGAACTTTCAACACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCCAGGAGGATTCGTGGCGAGAAAGCCAAGGTGAATTTCCCTGATGCAGCTCCAAGTATTTCCTCAAAACGTTCCAAGGTAAATCAAAAGGAGCAGCAGCTGAAGGAAACTCTTAGCTCTTTGAAGTCCAAAATGAACAATATGTTTGATTTTGGTGACAATCTGAAGGACTGCTACTCGCCTATGGATCACATGGAACAGAAACCACTGGTTAACCAGTATGCTAACATGGGCCCCTTCCCTGGAAATGGAGTTCAGTTCTCACCCCTTGCTGCATCTGCTGATGTTCCAACTTATTTCAGTTCGGAACATTCTAGCAACTCATTCGATTATTCTGATCTTGGATGGGGTGAACAAGGCCCTCAGACTCCTGAGATCTCATCCATGCTTTCTGCTCCTCTGGAAGTTGAATCTCAGTTTGTGCAGGATGCTGCTAACCAGCAGAATAACCTGCAGCCTAACTCTCAGGATCTGCTACCATTGCAAGATGATTCTGCAAAGACACTATCTGAGGAGCTTGCTGATATTGAATCCCAACTGAAGTTCTTTGATACCCCATTTCTTGATGGGAGCTGGGGTGATGATTCATTGTCATCCTTGCTTGGTGGAGATGCAACTCAGGATGGTGGAAACCCAATGAACCTTTGGAGCTTTGAGGACTTGCCTTCCCTTGCAGGAGGGGTTTTCTAA 1194 0.4807 MCGGAIISDFIPAATAGSRRVTADILWPNLRKPSSRKQKQFSKPLFSLDDDDFEAGFREFKDDSDFEDDEDDYDDDLFVGVKKPFAFASTKTKPSKSLSRVSTAAKAGESDEQAEKSATRKRKNQFRGIRQRPWGKWAAEIRDPRKGSRVWLGTFNTAEEAARAYDAEARRIRGEKAKVNFPDAAPSISSKRSKVNQKEQQLKETLSSLKSKMNNMFDFGDNLKDCYSPMDHMEQKPLVNQYANMGPFPGNGVQFSPLAASADVPTYFSSEHSSNSFDYSDLGWGEQGPQTPEISSMLSAPLEVESQFVQDAANQQNNLQPNSQDLLPLQDDSAKTLSEELADIESQLKFFDTPFLDGSWGDDSLSSLLGGDATQDGGNPMNLWSFEDLPSLAGGVF* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01772 397 Pfam AP2 domain 126 174 IPR001471 GO:0003700|GO:0006355
Rops4g01772 397 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Rops4g01772 397 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Rops4g01772 397 SMART rav1_2 125 188 IPR001471 GO:0003700|GO:0006355
Rops4g01772 397 MobiDBLite consensus disorder prediction 93 129 - -
Rops4g01772 397 FunFam Ethylene-responsive transcription factor 2 124 183 - -
Rops4g01772 397 CDD AP2 125 184 IPR001471 GO:0003700|GO:0006355
Rops4g01772 397 Coils Coil 192 215 - -
Rops4g01772 397 SUPERFAMILY DNA-binding domain 125 183 IPR016177 GO:0003677
Rops4g01772 397 Gene3D AP2/ERF domain 124 183 IPR036955 GO:0003700|GO:0006355
Rops4g01772 397 ProSiteProfiles AP2/ERF domain profile. 125 182 IPR001471 GO:0003700|GO:0006355
Rops4g01772 397 PANTHER DNA-BINDING DOMAIN 97 225 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01772 Rops-Chr4 41965393 41968731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01772 1 397 AP2-EREBP Transcription Factor Family AT3G14230 46.479 3.07e-70 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops4g01772 AP2 3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01772 K09286 - gmx:100818646 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01772 4 41965393 41968731 Rops4g01772 4 41965393 41968731 ECH