Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01770 ATGGAAGGAACTTCATCTTCCTCTAGGCCCTCTACTCATGATGACCATCATCTCCTAATTGATGATTTCTACTTTTCAGCCCTTCATGATGCTGAAGAAATATTTCCAATCTCTGATGAGAAATATGCAGAAGAGCTACAACTTCAAGAAGCCTTATATTCCTCTGTTATATCAAGTAGTGCTATAAAAAATGTTATCCAAGTTGTTGACACCCTCAAAGGGAAAGAGAAAGAGACTAGTCATGGTCAATCTTCCCAAGTATATTGTGTTATTTGCATGGAAACAAAACCTGCTGAAGAAATGTTCAAGAACCAAAACTGTTCTCACTCTTTCTGTGATGATTGTGTTGGAAGATATTTGGCTGCAAAGATTCAGGAGAATATATCAATGGTAAAATGCCCTGAACCAAAATGCAAAGGTGTTTTGGAGCCTCATCATTGTCGTTCAGTTATCCCAAAAGATGTTTTTGATAGATGGGAAAATGCCCTTTGTGAGAATCTAGTGCTTGGATCACAAAAATTTTATTGCCCTTTTAAGGATTGTTCAGCTATGCTTGTCAATGATGAAGGGGAAGATGTGACTGCTTCTGAATGTCCACATTGTAATAGATTGTTCTGTGCACAGTGCAAGGTTTCATGGCATGCAGGAATGGATTGTAGGGAATTTCGGAGCTTGAAAGAGGGAGAGAGAGAAAGGGAAGATATAATGGTAATGGAACTTGCCAAGAACAAGAGTTGGAGACGATGTGTGGTAATGAATTTTGCTATGTCTGTGGATCCTCATGGAGCTCGCGCCACTATCAATGTCGGCCGTAATAAGAATTGCAGAACGAGAGTGAAATTGCCAATGTTATTGTAA 858 0.3916 MEGTSSSSRPSTHDDHHLLIDDFYFSALHDAEEIFPISDEKYAEELQLQEALYSSVISSSAIKNVIQVVDTLKGKEKETSHGQSSQVYCVICMETKPAEEMFKNQNCSHSFCDDCVGRYLAAKIQENISMVKCPEPKCKGVLEPHHCRSVIPKDVFDRWENALCENLVLGSQKFYCPFKDCSAMLVNDEGEDVTASECPHCNRLFCAQCKVSWHAGMDCREFRSLKEGEREREDIMVMELAKNKSWRRCVVMNFAMSVDPHGARATINVGRNKNCRTRVKLPMLL* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01770 285 SMART ibrneu5 157 219 IPR002867 GO:0008270
Rops4g01770 285 Pfam IBR domain, a half RING-finger domain 158 219 IPR002867 GO:0008270
Rops4g01770 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 168 IPR013083 -
Rops4g01770 285 CDD BRcat_RBR_unk 170 222 - -
Rops4g01770 285 SUPERFAMILY RING/U-box 84 166 - -
Rops4g01770 285 Gene3D - 174 224 - -
Rops4g01770 285 ProSiteProfiles Zinc finger RING-type profile. 89 137 IPR001841 -
Rops4g01770 285 ProSitePatterns Zinc finger RING-type signature. 107 116 IPR017907 -
Rops4g01770 285 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 64 249 IPR031127 GO:0004842|GO:0016567
Rops4g01770 285 SUPERFAMILY RING/U-box 165 223 - -
Rops4g01770 285 ProSiteProfiles TRIAD supradomain profile. 85 285 IPR044066 -
Rops4g01770 285 FunFam RBR-type E3 ubiquitin transferase 84 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01770 Rops-Chr4 41908323 41909857 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01770 41 249 C3H Transcription Factor Family AT2G19610 22.321 2.48e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01770 K11975 - gmx:100816161 421.394