Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01768 ATGTTTCAGTTTCATCCTCAAGGAGCTCCCAAACAAACTTGTACTCTTCTTGCTGTTACCTGTGCCACAAGTTTCGTTGAGCACAAACCACCACAGGAGCAGCACAAATACCCTTTCCCTGAGTTGGTTTCTGCAGGGCGTCTCGAGGTTCAAACTCTGTGCAATCCGGAAAAGGAACAGTTTCGGAAAGTGCTTGAGTCGTATCAACCGAATTTTGTTTACTTACAAGGAGAGCAGCTAGAGAATGGGGAAGTTGGTTCACTGGTTTGGCAAGGTGTTGAATTATCCACTTCTGAAGCTATAGTAGAGCTCTTTGGTACCACATTGCCTACGGCTGTTTATTTAGAAATTCCAAATGGAGAAAGTATCGCAGAGGCTCTTCACTTTAAGGGAATCCCATATGTTATATTTTGGAAGAATGCTTTTTCTTGTTATGCTGCCTGCCATTTTCGTCAAGCATTTCTTTCAGTGGTGCAGAGTTCATCTACACATACATGGGATGCTTTCCACCTTGCACGAGCCTCTTTTGAACTTTACTGTGTTCAAAATAATCAAGTACTTCCTACTGACAGCAATGATGCTGATAGTGAGATGGGGCCACACCTTCTTGGCAACTGTCTCAAAATCAATGTTGACCCTCCAGAGATGGGTGAAGAAGATGATGAAGAAAGTTCCTCAGGCAGTCTTCCTGCTATAAAGATACATGAAGATGAAGTGAACTTGAGATTTCTCATCTGTGGTGCACCTTCCACTGTTGATGAGTCATTGCTGAGATCTTTGGAGGATGGACTCAGAGCTCTGTTAACTATTGAAATTCGTGGTTGCAAGCTCCATGGCAAGTTCAGTGCCCCCCCTCCACCTCTTCAGGCAGCTGCTTTTTCTCGTGGAGTTGTGACCATGCGATGTGATATATCAACCTGCAGCTCTGCACATATCTCTCTTCTGGTATCCGGCAGTGCACAAACTTGTTTTAATGATCAGCTCTTGGAGAGTCATATAAAAAACGAGATAATTGAGACGAGTCAACTAGTTAATGCACAACTCAACAATGAGGGGAACAAACAAAATATCTCTGAACCTCGCAGATCTGCTTCAATTGCTTGTGGAGCAAACATATTCGAAATTTGCATGAAGCTTCCTCAATGGGCTTTGCAGATTTTGAGACAGCTAGCACCTGATGTTTCTTATCGAAGTTTAGTTGCACTTGGCATTGCTAGTATCCAGGGGTTGCCTGTAGCTTCTTTTGAGAAAGATGATGCTGAGCGCTTACTTTTCTTCTATCAAAGCTGTGAGGAAGATAGTGGTGCAAACAAAAATGATATAGTTTTCAGTAGTCCCCCTGGTTGGTTGAAACCACCCCCTCCTACAAGAAAGAGGTGTGAACCAAGCCAAGTGGCTAGCCCTGGCCTTCATGATGGTGTCTTTGCTGGGCAGGGTGCTGTTCAAAAAGTAGATGAAGAGGAAAAGGATAGAAAAATGGTGAATGGGATTAGCACTCCCTTAACTCCAGCTAGGCAGAGATTAAAAGTATCTGCAATGAGGCCAATTCCTCATGTTCGTCGCCACAGAATGACACCTTTTTCTGGACCTTCTGAGATAGATGGTTTTGATGGTGGCCAAGTTGAGGCTAATTTGCCACTTGTTGCCCCTACAAAGCGTAGTAGTATTGGATCAACATCCGCAACACAGAGAAAATCATTTTCAACCTCAGCTCAGTCTAAGCAGGTTATTTCGTTGAACCCATTACCTTTGAAGAAACATGGTTGTGGCAGAGGCCCAGTACAGACTTGCTCGGAGGAGGAATTTCTTAAAGATGTCATGGAGTTTCTGATTCTCCGGGGACATAGTCGGCTGATTCCTCAAGGAGGGCTTGCTGAATTCCCTGATGCCATACTCAATGGAAAACGCCTTGATCTCTACAACTTGTATAAAGAGGTGGTTACCAGGGGAGGATTTCATGTTGGCAATGGCATCAACTGGAAGGGACAAATCTTTTCAAAAATGCGCAATTACACAACAACCAATAGAATGACTGGAGTTGGAAATACACTCAAAAGACATTATGAAACCTACCTTTTAGAATATGAATTAGCACATGATGACGTGGATGGAGAATGCTGCTTGTTGTGTCACAGTAGTGCAGCTGGGGATTGGGTGAATTGTGGCATATGTGGTGAATGGGCTCACTTTGGATGCGACAGAAGGCAGGGTCTTGGTGCATTTAAGGATTATGCAAAAACAGATGGGCTAGAATATATATGCCCTCATTGTAGTATTACAAATTTCAAGAAAAAACAAAGTGTTGCCAATGGGTATTCTCAAGGGTCAATGTCATCACGACCCCTTTGA 2349 0.4347 MFQFHPQGAPKQTCTLLAVTCATSFVEHKPPQEQHKYPFPELVSAGRLEVQTLCNPEKEQFRKVLESYQPNFVYLQGEQLENGEVGSLVWQGVELSTSEAIVELFGTTLPTAVYLEIPNGESIAEALHFKGIPYVIFWKNAFSCYAACHFRQAFLSVVQSSSTHTWDAFHLARASFELYCVQNNQVLPTDSNDADSEMGPHLLGNCLKINVDPPEMGEEDDEESSSGSLPAIKIHEDEVNLRFLICGAPSTVDESLLRSLEDGLRALLTIEIRGCKLHGKFSAPPPPLQAAAFSRGVVTMRCDISTCSSAHISLLVSGSAQTCFNDQLLESHIKNEIIETSQLVNAQLNNEGNKQNISEPRRSASIACGANIFEICMKLPQWALQILRQLAPDVSYRSLVALGIASIQGLPVASFEKDDAERLLFFYQSCEEDSGANKNDIVFSSPPGWLKPPPPTRKRCEPSQVASPGLHDGVFAGQGAVQKVDEEEKDRKMVNGISTPLTPARQRLKVSAMRPIPHVRRHRMTPFSGPSEIDGFDGGQVEANLPLVAPTKRSSIGSTSATQRKSFSTSAQSKQVISLNPLPLKKHGCGRGPVQTCSEEEFLKDVMEFLILRGHSRLIPQGGLAEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSITNFKKKQSVANGYSQGSMSSRPL* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01768 782 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 700 762 IPR013083 -
Rops4g01768 782 SMART ARID_2 593 696 - -
Rops4g01768 782 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 6 779 IPR042293 -
Rops4g01768 782 Gene3D - 594 699 IPR036431 GO:0003677
Rops4g01768 782 ProSiteProfiles ARID domain profile. 596 700 IPR001606 GO:0003677
Rops4g01768 782 Pfam ARID/BRIGHT DNA binding domain 599 696 IPR001606 GO:0003677
Rops4g01768 782 SUPERFAMILY ARID-like 596 711 IPR036431 GO:0003677
Rops4g01768 782 CDD PHD_ARID4_like 706 757 - -
Rops4g01768 782 MobiDBLite consensus disorder prediction 552 574 - -
Rops4g01768 782 SUPERFAMILY FYVE/PHD zinc finger 699 766 IPR011011 -
Rops4g01768 782 CDD ARID 598 696 - -
Rops4g01768 782 SMART bright_3 597 701 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01768 Rops-Chr4 41853367 41863727 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01768 4 771 ARID Transcription Factor Family AT3G43240 60.774 0.0 944
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Rops4g01768 ARID 2.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01768 - - gmx:100816540 1449.49