LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops4g01755	ATGGATTCTATCAAGTCCTTCAAGGGCTACGGTAAAGTAGACGAGGAGGAACAACGAGCCTTCAAGAAGAAGACACGCAAGCGTGTGTTAATAGTTATAGTCTCTTCCGTTGTTCTGTTAGCGGTGATCATAGCCGCGGTAGTAGGGATCGTGATACACAAGAACAACACCTCATCATCATCACAATCTGACTCGGGTCCTCAAACTGAGTTAACCCCGGCCGCATCACTGAAAGCTATTTGCGATGTGACTCAGTACCCTAACTCGTGCTTCGCTGCAATCTCTTCTCTTCCGAATTCAAACACCACCGATCCTGTTCAACTCTTCAAACTCTCACTCCGAGTCGCGAGTAACGAACTCGCGAAGCTTACGCGCTTTGTTAATTCTAAACCACGCGCCAATGGCGACACGCGCGTTAAAAAAGCCATTGATGTTTGCGCCGCCGTACTCGACGACGCGCTTGGTAGTCTCAACGAATCGATCTCATCTCTCGGCGATTCCGGCGCCGGAAAGATTCTCTCTCCGGCGACGATCGGCGATGTGGAGACCTGGCTCAGCGCGGCCATAACGGACCAGGACACGTGCCTCGATGCAATCGGAGAATTGAACTCCACCGCCGCTCGCGGTGTTCTCCGGGAGATGGAAACCGCAATGAAGAACTCAACGGAGTTCGCGAGTAACAGTTTGGCCATTGTTACGAGGATCTTAGGGTTGCTCTCGAAGTTCGACGCGCCGATTCATCACCGGAGGTTGCTCGGAGAGTTTCCGGAATGGTTGGGCGCGGCGGAGAGGAGGCTGCTGGCGGCGGAGGGAAATGAAACGACTCCGCACGCGGTGGTAGCGAAGGACGGAAGTGGACAGTACACGACGATTGCGGCGGCGCTTAAGGCGGTGAAGAAGAAGAGCGAGGAGAGGTTCGTGGTGTACGTGAAGAAAGGGGAATATGAAGAGAACATCGATTTGGATAAGAACACGTGGAATGTGATGATCTACGGTGATAGCATGAGCGAAACCGTCGTCCGCGGTGGCCGGAACTTCATTGACGGCACGCCCACTTTTGAAACTGCAACTTTCGCTCCCACCTACCTTGGGAGGCCATGGAAAGATTATTCCACCACTGTTATCATGCAATCTGATATTGGGTCATTTTTGAAACCAGTGGGGTGGATGAGTTGGGTTGCCAATGTGGAACCTCCAAATACCATCTTCTATGCTGAATACCAGAACTCTGGGCCTGGTGCAGATGTGGCCCAGAGGGTCAAATGGGCTGGTTATAAGCCCACTCTCACAGACGTTGAAGCTGGGAAGTTCACTGTGGAGTCCTTTATCCATGGCCCTGAGTGGTTGCCAAATGCTGCTGTCGAGTTTGAGTCTACCTTGTGA	1383	0.5235	MDSIKSFKGYGKVDEEEQRAFKKKTRKRVLIVIVSSVVLLAVIIAAVVGIVIHKNNTSSSSQSDSGPQTELTPAASLKAICDVTQYPNSCFAAISSLPNSNTTDPVQLFKLSLRVASNELAKLTRFVNSKPRANGDTRVKKAIDVCAAVLDDALGSLNESISSLGDSGAGKILSPATIGDVETWLSAAITDQDTCLDAIGELNSTAARGVLREMETAMKNSTEFASNSLAIVTRILGLLSKFDAPIHHRRLLGEFPEWLGAAERRLLAAEGNETTPHAVVAKDGSGQYTTIAAALKAVKKKSEERFVVYVKKGEYEENIDLDKNTWNVMIYGDSMSETVVRGGRNFIDGTPTFETATFAPTYLGRPWKDYSTTVIMQSDIGSFLKPVGWMSWVANVEPPNTIFYAEYQNSGPGADVAQRVKWAGYKPTLTDVEAGKFTVESFIHGPEWLPNAAVEFESTL*	461

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops4g01755	460	Gene3D	Invertase/pectin methylesterase inhibitor family protein	75	236	IPR035513	-
	Rops4g01755	460	SMART	PMEI_2	72	231	IPR006501	GO:0004857
	Rops4g01755	460	CDD	PMEI-like_3	79	235	-	-
	Rops4g01755	460	NCBIfam	pectinesterase inhibitor domain	62	233	IPR006501	GO:0004857
	Rops4g01755	460	PANTHER	PECTINESTERASE	38	359	-	-
	Rops4g01755	460	FunFam	Pectinesterase	73	236	-	-
	Rops4g01755	460	SUPERFAMILY	Pectin lyase-like	276	457	IPR011050	-
	Rops4g01755	460	Pfam	Plant invertase/pectin methylesterase inhibitor	77	231	IPR006501	GO:0004857
	Rops4g01755	460	Pfam	Pectinesterase	278	359	IPR000070	GO:0030599\|GO:0042545
	Rops4g01755	460	Pfam	Pectinesterase	360	445	IPR000070	GO:0030599\|GO:0042545

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops4g01755	Rops-Chr4	41662264	41663548	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops4g01755	358	454	Carbohydrate Esterase	AT1G53840	61.856	7.05e-41	152

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops4g01755	-		-	gmx:100777128	483.026

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