Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01755 ATGGATTCTATCAAGTCCTTCAAGGGCTACGGTAAAGTAGACGAGGAGGAACAACGAGCCTTCAAGAAGAAGACACGCAAGCGTGTGTTAATAGTTATAGTCTCTTCCGTTGTTCTGTTAGCGGTGATCATAGCCGCGGTAGTAGGGATCGTGATACACAAGAACAACACCTCATCATCATCACAATCTGACTCGGGTCCTCAAACTGAGTTAACCCCGGCCGCATCACTGAAAGCTATTTGCGATGTGACTCAGTACCCTAACTCGTGCTTCGCTGCAATCTCTTCTCTTCCGAATTCAAACACCACCGATCCTGTTCAACTCTTCAAACTCTCACTCCGAGTCGCGAGTAACGAACTCGCGAAGCTTACGCGCTTTGTTAATTCTAAACCACGCGCCAATGGCGACACGCGCGTTAAAAAAGCCATTGATGTTTGCGCCGCCGTACTCGACGACGCGCTTGGTAGTCTCAACGAATCGATCTCATCTCTCGGCGATTCCGGCGCCGGAAAGATTCTCTCTCCGGCGACGATCGGCGATGTGGAGACCTGGCTCAGCGCGGCCATAACGGACCAGGACACGTGCCTCGATGCAATCGGAGAATTGAACTCCACCGCCGCTCGCGGTGTTCTCCGGGAGATGGAAACCGCAATGAAGAACTCAACGGAGTTCGCGAGTAACAGTTTGGCCATTGTTACGAGGATCTTAGGGTTGCTCTCGAAGTTCGACGCGCCGATTCATCACCGGAGGTTGCTCGGAGAGTTTCCGGAATGGTTGGGCGCGGCGGAGAGGAGGCTGCTGGCGGCGGAGGGAAATGAAACGACTCCGCACGCGGTGGTAGCGAAGGACGGAAGTGGACAGTACACGACGATTGCGGCGGCGCTTAAGGCGGTGAAGAAGAAGAGCGAGGAGAGGTTCGTGGTGTACGTGAAGAAAGGGGAATATGAAGAGAACATCGATTTGGATAAGAACACGTGGAATGTGATGATCTACGGTGATAGCATGAGCGAAACCGTCGTCCGCGGTGGCCGGAACTTCATTGACGGCACGCCCACTTTTGAAACTGCAACTTTCGCTCCCACCTACCTTGGGAGGCCATGGAAAGATTATTCCACCACTGTTATCATGCAATCTGATATTGGGTCATTTTTGAAACCAGTGGGGTGGATGAGTTGGGTTGCCAATGTGGAACCTCCAAATACCATCTTCTATGCTGAATACCAGAACTCTGGGCCTGGTGCAGATGTGGCCCAGAGGGTCAAATGGGCTGGTTATAAGCCCACTCTCACAGACGTTGAAGCTGGGAAGTTCACTGTGGAGTCCTTTATCCATGGCCCTGAGTGGTTGCCAAATGCTGCTGTCGAGTTTGAGTCTACCTTGTGA 1383 0.5235 MDSIKSFKGYGKVDEEEQRAFKKKTRKRVLIVIVSSVVLLAVIIAAVVGIVIHKNNTSSSSQSDSGPQTELTPAASLKAICDVTQYPNSCFAAISSLPNSNTTDPVQLFKLSLRVASNELAKLTRFVNSKPRANGDTRVKKAIDVCAAVLDDALGSLNESISSLGDSGAGKILSPATIGDVETWLSAAITDQDTCLDAIGELNSTAARGVLREMETAMKNSTEFASNSLAIVTRILGLLSKFDAPIHHRRLLGEFPEWLGAAERRLLAAEGNETTPHAVVAKDGSGQYTTIAAALKAVKKKSEERFVVYVKKGEYEENIDLDKNTWNVMIYGDSMSETVVRGGRNFIDGTPTFETATFAPTYLGRPWKDYSTTVIMQSDIGSFLKPVGWMSWVANVEPPNTIFYAEYQNSGPGADVAQRVKWAGYKPTLTDVEAGKFTVESFIHGPEWLPNAAVEFESTL* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01755 460 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 236 IPR035513 -
Rops4g01755 460 SMART PMEI_2 72 231 IPR006501 GO:0004857
Rops4g01755 460 CDD PMEI-like_3 79 235 - -
Rops4g01755 460 NCBIfam pectinesterase inhibitor domain 62 233 IPR006501 GO:0004857
Rops4g01755 460 PANTHER PECTINESTERASE 38 359 - -
Rops4g01755 460 FunFam Pectinesterase 73 236 - -
Rops4g01755 460 SUPERFAMILY Pectin lyase-like 276 457 IPR011050 -
Rops4g01755 460 Pfam Plant invertase/pectin methylesterase inhibitor 77 231 IPR006501 GO:0004857
Rops4g01755 460 Pfam Pectinesterase 278 359 IPR000070 GO:0030599|GO:0042545
Rops4g01755 460 Pfam Pectinesterase 360 445 IPR000070 GO:0030599|GO:0042545
Rops4g01755 460 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 236 IPR035513 -
Rops4g01755 460 Gene3D - 271 359 IPR012334 -
Rops4g01755 460 Gene3D - 360 460 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01755 Rops-Chr4 41662264 41663548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01755 358 454 Carbohydrate Esterase AT1G53840 61.856 7.05e-41 152