Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01754 ATGTCTAAGATAAAACAAGCCTTCACCGGAATCTCAGATTCCGGCAACCGCATTTCCCTATCCAAGAAGAAGCTCTTGTTATCTTTCTTCGCCACCCTTCTTCTTGTTGCCTCGGTAGTAACCATTGTTGCTGGAGTAAACTCCAACAAAAAGAACTCAAATAATGATTCCATTTCTTCTTCTTCTTTATCTCTCTCTCACCACTCTCACACCATCATCAAAAGCGCTTGCAGCACCACATTCTACCCAGAACTTTGTTTCTCAGCTATATCCTCAGAACCTAACATCACACACAAAGTCACAAACCACAAAGATGTTATAGAGTTATCCCTCAACATCACCTTCAGAGCTGTTGAACACAACTTCTTCACCATTGAGAAGCTCTTAATCCAAAAGGGTCTCACCAAAAGGGAAAAAACAGCACTCCATGATTGCTTGGAAACCATTGATGATACCCTTGATGAACTCAAAGAGGCTATACAAGACCTCAAACTATACCCAAACAAGAAAACCGTTTATCAACATGCTGATGACCTTAAAACCCTTATAAGTTCAGCCATAACAAACCAAATCACTTGCTTGGATGGTTTCTCTCATGATGGTGCTGACAAGAAGATAAGAAAGGTTCTTGAAGATGGACAAACACACGTGGAACACATGTGTAGCAATGCATTGGCCATGACAAAGAACATGACAGACAATGACATAGCCAACTATGAACAAAATATGTTGATGTTGGGAAACAAGAACAGGAAGTTGATGGAGGAAGTGGAAGAGGAGAATGGTGGTGTGAAGTGGCCGGAGTGGATTTCTGCAGCGGATAGGAAGCTTCTTCAGTCGTCTGCGGTGAAGCCGGACGTGGTGGTGGCGGCGGATGGAAGTGGTGACTTCAAAACGGTGTCGGCTGCAGTGGCTGCAGCTCCTCTGAAGAGTAACAAAAGATTTGTTATAAGGATAAAAGCTGGGGTGTATAGAGAGAATGTGGAGGTACCGAAGAAGAAGACTAATATAATGTTCTTGGGTGATGGAAGAACTAACACTATCATCACTGGTAGTAGAAATGTTGTTGATGGTAGCACCACCTTCCACTCTGCCACTGTCGCTGTTGTGGGTGGACAATTTTTAGCACGAGACATCACTTTCCAAAACACAGCAGGTCCCTCTAAGCACCAAGCTGTGGCCCTAAGAGTTGGTGGTGATTTCTCAGCTTTCTACAATTGTGACTTCTTAGCATACCAAGATACCCTTTATGTTCACAACAATCGCCAATTCTTTGTGAACTGCCTAATATCAGGCACAGTTGATTTCATCTTTGGTAACTCAGCTGTGGTGTTCCAAAATTGTGACATACATGCTAGGCGTCCTGATTCAGGTCAAAAGAACATGGTCACTGCACAAGGAAGGGTTGACCCCAACCAAAACACTGGCATTGTGATACAAAAGTGTAGAATTGGTGCCACTAAGGATTTGGAAGCTGTGAAGGGTAGCTTCCCTACTTATCTTGGGAGGCCTTGGAAGGAGTACTCTAGGACTGTGATTATGCAAACTAGTATTAGTGATGTGATTGACCCTGTTGGGTGGCATGAATGGAATGGGAACTTTGCTTTGAGCACTTTGGTTTATAGGGAATATCAGAATACTGGGCCTGGTGCTGGAACTTCTAAGAGGGTTACATGGAAAGGGTTTGAGGTTATTACCAATGCTGCTGAGGCCCAACCTTTTACTCCTGGAAACTTCATTGCTGGCTCTAACTGGTTGGGCTCTACTGGGTTTCCTTTCTCTCTTGGGTTGTAA 1794 0.4365 MSKIKQAFTGISDSGNRISLSKKKLLLSFFATLLLVASVVTIVAGVNSNKKNSNNDSISSSSLSLSHHSHTIIKSACSTTFYPELCFSAISSEPNITHKVTNHKDVIELSLNITFRAVEHNFFTIEKLLIQKGLTKREKTALHDCLETIDDTLDELKEAIQDLKLYPNKKTVYQHADDLKTLISSAITNQITCLDGFSHDGADKKIRKVLEDGQTHVEHMCSNALAMTKNMTDNDIANYEQNMLMLGNKNRKLMEEVEEENGGVKWPEWISAADRKLLQSSAVKPDVVVAADGSGDFKTVSAAVAAAPLKSNKRFVIRIKAGVYRENVEVPKKKTNIMFLGDGRTNTIITGSRNVVDGSTTFHSATVAVVGGQFLARDITFQNTAGPSKHQAVALRVGGDFSAFYNCDFLAYQDTLYVHNNRQFFVNCLISGTVDFIFGNSAVVFQNCDIHARRPDSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATKDLEAVKGSFPTYLGRPWKEYSRTVIMQTSISDVIDPVGWHEWNGNFALSTLVYREYQNTGPGAGTSKRVTWKGFEVITNAAEAQPFTPGNFIAGSNWLGSTGFPFSLGL* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01754 597 ProSitePatterns Pectinesterase signature 2. 430 439 IPR033131 -
Rops4g01754 597 CDD PMEI-like_3 75 232 - -
Rops4g01754 597 SUPERFAMILY Pectin lyase-like 281 596 IPR011050 -
Rops4g01754 597 PANTHER PECTINESTERASE 39 587 - -
Rops4g01754 597 Gene3D - 280 597 IPR012334 -
Rops4g01754 597 FunFam Pectinesterase 69 232 - -
Rops4g01754 597 Pfam Plant invertase/pectin methylesterase inhibitor 72 227 IPR006501 GO:0004857
Rops4g01754 597 SMART PMEI_2 68 227 IPR006501 GO:0004857
Rops4g01754 597 Pfam Pectinesterase 286 582 IPR000070 GO:0030599|GO:0042545
Rops4g01754 597 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 71 232 IPR035513 -
Rops4g01754 597 Coils Coil 236 256 - -
Rops4g01754 597 FunFam Pectinesterase 280 597 - -
Rops4g01754 597 ProSitePatterns Pectinesterase signature 1. 311 330 IPR018040 -
Rops4g01754 597 Coils Coil 146 166 - -
Rops4g01754 597 Gene3D Invertase/pectin methylesterase inhibitor family protein 68 233 IPR035513 -
Rops4g01754 597 NCBIfam pectinesterase inhibitor domain 61 231 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01754 Rops-Chr4 41650789 41656633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01754 64 597 Carbohydrate Esterase AT3G14310 73.260 0.0 822
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01754 K01051 - gmx:100776623 942.184