Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01750 ATGGGTGCAACATCAGGGTCAAGTGATAAATGGGGTGATCCTGATACTGTTGAAATGACAGGAAAAATCATGGTGGTAGCTGTAATATTTCTCTTCATGGTGGTTGTGTTTGTTCTGTTACTTCATATCTATGCTAAATGGTTCTGGTGGCGCATTGAGGAAACCACTGCTCCTCAACCAAGTAACCGCCGCCGTCGCCGGCGGTTTGTTTTTGCACCTGGTCAAGACCCTGTCATCTATGGCAGCACTCACCAAATTGGACTTGACCCTTTAGTTCTTAGATCCTTGCCAGTGTTGGTGTTTCAACCAGAGGATTTCAAAGATGGTTTGGAATGTGCAGTTTGTCTCTCTGAGATTGTTCAAGGTGAAAAGGCAAGGCTTTTACCAAAATGCAATCATGGGTTTCATGTAGATTGCATAGATATGTGGTTCCAATCCCATTCTACTTGCCCTCTTTGTAGGAACCCAGTTGCATCTGAATCCTCTGAACCTATTAGTTCAAATGCTGAAGAGAATGTGTCAGGGAATAGTGAGCCATCAGAAGCAGAAAATTCAGCTTTAGAATCTTCAAATTTTCCGACAAATGTGTTAGTTTGGGGAGATCACACCCAAGTTAGTTCTTTTGGTGTTTCCTTGGAAGAAGGCACTTCTCAGCAACCACTACTTTGCTCTCCATCATCTTCTTCAACCAGTGATGGTATTATTAATAGTAGATGTAATGGAATGTTGGTGATTGATATACCAAATGAGGTCACTTCATCCTCTTTATCACCTTCTGCTAGTAGGTGTGCTGAAGAAGAGCTAAAATCACCAATGACAGCAAGATTGAGGTCATTTAAGAGGCTTTTAAGCAGGGAGAAAAAGTTAAGTCCTTGTAGTCCCAGTTCTATGGAAGTGGAACAAGCACAGAGTTAG 915 0.4208 MGATSGSSDKWGDPDTVEMTGKIMVVAVIFLFMVVVFVLLLHIYAKWFWWRIEETTAPQPSNRRRRRRFVFAPGQDPVIYGSTHQIGLDPLVLRSLPVLVFQPEDFKDGLECAVCLSEIVQGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRNPVASESSEPISSNAEENVSGNSEPSEAENSALESSNFPTNVLVWGDHTQVSSFGVSLEEGTSQQPLLCSPSSSSTSDGIINSRCNGMLVIDIPNEVTSSSLSPSASRCAEEELKSPMTARLRSFKRLLSREKKLSPCSPSSMEVEQAQS* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01750 304 SMART ring_2 112 153 IPR001841 -
Rops4g01750 304 SUPERFAMILY RING/U-box 92 159 - -
Rops4g01750 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 163 IPR013083 -
Rops4g01750 304 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Rops4g01750 304 FunFam RING-H2 finger protein ATL3 80 159 - -
Rops4g01750 304 CDD RING-H2_EL5-like 111 154 - -
Rops4g01750 304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 229 - -
Rops4g01750 304 MobiDBLite consensus disorder prediction 160 187 - -
Rops4g01750 304 Pfam Ring finger domain 111 154 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01750 Rops-Chr4 41591759 41593310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01750 18 287 C3H Transcription Factor Family AT1G53820 45.424 4.92e-69 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01750 - - gmx:100777158 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01750 4 41591759 41593310 Rops4g01750 4 41591759 41593310 ECH