Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01749 ATGGCTCATTCATTTCAGAAAAACAGGATCCAAGGGCTGCATAAGATGTACAAGCATTTTAGCTATGGTGGTGCAGTGAAGGAGACAGAACAAGGTGAAAGTGATAATTGTACAGTGTGTCTAAGCCAAATGTGTAAAGGGGAAAAGATTAGGTCTCTGCCACTTTGCAACCATAGATATCATGCTGATTGTATAGATGCTTGGTTGAAGAACCACACCACTTGCCCTCTCTGTAGGAACAATATCACTGACCATATCTCCCAGAGTCAACACAAACAGATGAAACCCTTTGGAGACTTTTGGGTTTGTCTCATACAGAGTTTCTCTGATCTATTGGTAGCTCTTATCTACAGGGTTCTTCCATCTAGCTTCACTGAGACTTTCCCCTTGGTTCATTGA 399 0.4185 MAHSFQKNRIQGLHKMYKHFSYGGAVKETEQGESDNCTVCLSQMCKGEKIRSLPLCNHRYHADCIDAWLKNHTTCPLCRNNITDHISQSQHKQMKPFGDFWVCLIQSFSDLLVALIYRVLPSSFTETFPLVH* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01749 132 ProSiteProfiles Zinc finger RING-type profile. 37 79 IPR001841 -
Rops4g01749 132 Pfam Ring finger domain 35 79 IPR001841 -
Rops4g01749 132 SUPERFAMILY RING/U-box 28 86 - -
Rops4g01749 132 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 20 83 IPR044675 -
Rops4g01749 132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 85 IPR013083 -
Rops4g01749 132 CDD RING-H2_PA-TM-RING 37 79 - -
Rops4g01749 132 SMART ring_2 37 78 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01749 Rops-Chr4 41583647 41584045 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01749 5 95 C3H Transcription Factor Family AT2G17450 33.684 1.66e-17 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01749 - - gmx:100500375 198.364