Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01743 ATGACGATGAAGAACACCAACAACAACAACAACAACAACGTTGGACCATTTGGGGACACGACAATGACCAAGGTTTTTGTTGGTGGGTTAGCTTGGGAAACTCCTAAGGATGCCCTCAAAGACCACTTTGGGAAGTATGGTGAGATCCTTGAAGCTGTCATCATTTCTGATAAGTTCAGTGGCAAATCCAAAGGCTATGGCTTTGTGACATTCAAGGAGGCTGAGGCCGCTAAGAAGGCTTGTGTGGATTCAGAAACTCTCATTATCAATGGCCGTAAAGCAAACTGCAATTTGGCTTCCTTAGGAGCTCGTCGTCCAAAGTCTTCTTTCAATGCTTCACCACCACCACAGCTACAAGAAGGATCAAACGGTGGAGGACCGAGGAACAACGCATCCAGTGCACCAGCTAATCGTGTGCAGTGGTATTATCCGGTGGGGGCACCTGCTTCGCCATTTCATCATCACACACTTCCTTTCTATGGGTACACACCCACCTACGTTGCAACGGACATGAATTACAATTACAATCAGAAGCTGAACTATGGCAGTTGTGGGGTCTACATGAATGGGCACCACTTGTCCCATGTGTACCCGAGGCATGCTATGGTGGGTGCGAACACATTGATGCCAATGTACCCTATCTATCAGTTTCATCACCCAACGGAGACCATGGGTGTACCTGCTCCCATCTTTTATCAAACGGCAGCGAGGCCTTTTGCCCCCGTGCCAGCTGGCATCATGACCAAGCCCGCATCCATCACTCCTCACACATGTACAGTTGGCACTGGTGAATGCTTTAAAAGGGTTGTGTGA 813 0.4859 MTMKNTNNNNNNNVGPFGDTTMTKVFVGGLAWETPKDALKDHFGKYGEILEAVIISDKFSGKSKGYGFVTFKEAEAAKKACVDSETLIINGRKANCNLASLGARRPKSSFNASPPPQLQEGSNGGGPRNNASSAPANRVQWYYPVGAPASPFHHHTLPFYGYTPTYVATDMNYNYNQKLNYGSCGVYMNGHHLSHVYPRHAMVGANTLMPMYPIYQFHHPTETMGVPAPIFYQTAARPFAPVPAGIMTKPASITPHTCTVGTGECFKRVV* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01743 270 PANTHER BOULE-RELATED 11 232 - -
Rops4g01743 270 SMART rrm1_1 24 97 IPR000504 GO:0003723
Rops4g01743 270 SUPERFAMILY RNA-binding domain, RBD 16 127 IPR035979 GO:0003676
Rops4g01743 270 Gene3D - 2 113 IPR012677 -
Rops4g01743 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 92 IPR000504 GO:0003723
Rops4g01743 270 MobiDBLite consensus disorder prediction 105 133 - -
Rops4g01743 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 101 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01743 Rops-Chr4 41533436 41536199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01743 19 166 C2H2 Transcription Factor Family AT2G19380 30.061 4.39e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01743 - - lang:109337745 403.675