Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01741 ATGGTCATGCCTTCCCAAAAATCTTCTTTTCCATTGGTTCATGATACCCTTATGTCCCCTTCTTCCTCCTCCTTCTTCTCCTCCTTTCTTGTGAGGGAAAATCATAACAAAGACTCCATTTTTACCTTCTTTGTTCTCATGAGATCAACCCCATCAACATCACCATCACCACCACCCTCTTCTTCTTCTTCTTCCTCCTATTCTGCTGCATATTCTTGTAATTACATGGTTTCCAAGTTGATGGTCTCTGTCATAGTACCCTTACTTTTTCTGTCCTTTTTTGTTGCTCAAGTTTCCTCTTCTTGTAATCAGATTGATAGAGACTCTCTCTTGGCTTTCTCTGGGAACTTATCCATTTCTTCTCCTTACCCTTCTCTTGATTGGCCTTCTTCTTCTTCTGATTGTTGCTCTTGGGAAGGCATTACTTGTGATGGGGATAACCGTGTTACTCATCTTTTGTTACCATCTAGAGGTCTTAATGGTTTTATCTCACCATCTATCACAAGCCTTGTTGCTCTCTCTCACCTTAATTTGTCACATAATAGGTTATCTGGTAATCTACACAACCAGTTTTTCTCACTGCTTAATCACTTGTTGATTCTTGATTTAAGCTACAACAGACTCTCTGGTGAATTGCCACCCTTTGTTGTTGATAAAAGTAGCAGCAATGGCACTGGTGTTATTCAGGAACTGGACTTGTCTAGTAATTCATTCAATGGAACACTTCCAACTTCTCTAGTTCAGCACCTTGCAGCTGCAGCAGCAGGAGGGAGTTTGATATCTTTCAATGTTAGTAACAATAGCTTCACAGGTCACATTCCCACCGCTCTCTTTTGCATTAATGACAATAACTCCTCATCTCTCAGATTCTTGGATTATTCTTCCAATGATTTTGATGGTATGATTGAGCCTGGACTAGGCGCGTGTTCCAAGCTGGAGAAATTTAGAGCTGGTTTCAATCTTCTATCAGGGACTATCCCAAGTGATATCATTGATGCTGTTTCTCTCACAGAAATCTCATTGCCTCTTAATAAACTCACTGGAACAATTGGTGATGGCATTGTTAGCCTTACAAACCTCACAGTTTTGGAGCTTTACTCCAATCATTTCACTGGCCCCATTCCACTGGATATTGGTAAACTCACCAAATTGGAAAGGCTACTTCTTCATGTCAACAATTTGACAGGTACTCTGCCCCCATCTTTGATGAACTGTGTCAATCTTGTTGTGTTGAATTTAAGGGTCAACAAGTTGGAGGGAAATCTCTCAGCATTCAATTTCTCAGGGTTCCTCAAACTTGCTACACTTGATCTTGGTAACAATAAATTTACTGGTGTTTTACCACCAACCCTTTATGCATGCAAGTCACTTGCAGCAGTAAGGTTAGCAGCTAATCAACTTGAGGGACAGATTTCACCAAAGATACTTGGACTTGAGTCTCTTTCTTTCCTGTCAGTTTCTGATAACAAGCTGAGGAATATCACTGGGGCTTTGAGAATACTCACAGGGCTCAAGAAGCTTAGTACCCTCATGCTCTCCAAGAATTTTTTCAATGAAATGATACCAAATGATGTAAACATAATAGACTCTGATGGATTCCAAAATCTCCAGGTTCTAGGCTTAGGTGGTTGTAATTTCACAGGTCAGATACCAAGCTGGCTTGCAAAACTGAAGAAGCTTGAAGCCTTGGACCTGTCCTTTAATCAATTCAATGGTTCAATTCCTCCTTGGTTGGGTACACTTCCTCAGCTTTTCTACATAGACTTATCTGTTAACCACCTTACAGGGACATTTCCAATTGAATTCACAGGACTCCCAGCACTAACATCACAACAGGCAAATGATAAAATAGAAAGGACTTATTTTGAGTTACCTGTATTTGCTAATGCCAACAATGTTTCCCTCTTGCAATATAATCAGCTTTCCGCCCTACCACCATCACTATATCTGGGAATCAATCACCTAAGTGGCAGTATCCCAATTGAGATTGGCCAACTGAAAGTCCTTCTTCAGCTGGGGCTGGAGGAAAACAACTTCTCTGGCAATATACCAATGCAAATTTCAAACTTGACTAACTTAGAGAAACTAGATCTCTCAGGAAACCATCTATCTGGTGAAATTCCTGATTCACTCAGAAGATTACATTTCTTGTCTTTTTTCAGTGTAGCAAACAATAATCTTCAAGGACAGATACCAACTGGTGGTCAATTTGATACTTTCTCCTCATCCAGCTTTGAAGGGAACCCTCAATTGTGTGGTTCAGTTATTCAGCGCTCTTGTCCCTCTCAACAAAATAATAATAGTAATGCAGCTAGTGGCAGCTCAAACAAAAAAGTAATAATTGGACTCATCATTGCAGTCTGTTTTGGCATAGCTGCCTCGGTGACATTGTTGACACTGTGGATAATCTCCAAGAGGAGGGTCAATCCAGGAGGAGTTCCAGAAGACAAGATTGAACTGGAATCAATTTCTGCCTATTCCAACAATGGGGTTCATCCAGAGGTTGACAAGGAGGCTAGCCTAGTGGTATTGTTCCCCAACAAAACTAATGAAACCAAGGATCTTACCATATATGAGATCATAAAAGCCACTGAAAATTTCAGTCAGGCAAACATAATAGGATGTGGGGGTTTTGGTTTGGTTTATAAAGCAACACTACCGAATGGAACTATACTAGCCATCAAGAAACTTTCAGGAGATTTAGGCCTTATGGAAAGGGAATTTAAAGCTGAGGTAGAGGCTTTGTCAACAGCACAACATGAGAATCTGGTGGCATTGCAAGGCTACTGTGTGCATGATGGTTTTCGGCTTCTCATATATAACTACATGGAAAATGGAAGTTTAGATTACTGGTTGCATGAAAAGGCTGATGGTGCATCTCAACTTGATTGGCCAACTCGTTTGAAGATTGCACAAGGGGCAAGTTGTGGTTTGGCTTATTTGCATCAGATATGTGAACCACATATTGTGCATCGTGATATAAAGTCAAGCAATATTCTCCTTGATGAGAAGTTTGAGGCACATGTTGCTGATTTTGGGTTGTCCAGATTGATTCTTCCATATCATACTCATGTTACAACTGAACTTGTAGGTACACTAGGTTATATTCCCCCAGAGTATGGACAAGCATGGGTGGCTACTTTGAGAGGAGATGTGTACAGCTTTGGTGTTGTCATGCTTGAGCTACTCACTGGGAGAAGGCCTGTTGATGTATGCAAGCCAAAAATGTCAAGGGAGTTGGTTGGATGGGTTCAACAGATGAGAAGTGAAGGAAAACAAGATCAAGTGTTTGACCCTCTTTTGAGAGGGAAGGGCTATGAAGGAGAGATGTTGCAGGTATTGGATGTGGCCTGCATGTGTGTCAGCCAGAATCCTTTCAAGAGACCAAGCATCAGAGAAGTTGTTGAATGGCTAAAGAATGTAGGATCAGCCAACCAACAAAGAAATAAAGATTAG 3456 0.4089 MVMPSQKSSFPLVHDTLMSPSSSSFFSSFLVRENHNKDSIFTFFVLMRSTPSTSPSPPPSSSSSSSYSAAYSCNYMVSKLMVSVIVPLLFLSFFVAQVSSSCNQIDRDSLLAFSGNLSISSPYPSLDWPSSSSDCCSWEGITCDGDNRVTHLLLPSRGLNGFISPSITSLVALSHLNLSHNRLSGNLHNQFFSLLNHLLILDLSYNRLSGELPPFVVDKSSSNGTGVIQELDLSSNSFNGTLPTSLVQHLAAAAAGGSLISFNVSNNSFTGHIPTALFCINDNNSSSLRFLDYSSNDFDGMIEPGLGACSKLEKFRAGFNLLSGTIPSDIIDAVSLTEISLPLNKLTGTIGDGIVSLTNLTVLELYSNHFTGPIPLDIGKLTKLERLLLHVNNLTGTLPPSLMNCVNLVVLNLRVNKLEGNLSAFNFSGFLKLATLDLGNNKFTGVLPPTLYACKSLAAVRLAANQLEGQISPKILGLESLSFLSVSDNKLRNITGALRILTGLKKLSTLMLSKNFFNEMIPNDVNIIDSDGFQNLQVLGLGGCNFTGQIPSWLAKLKKLEALDLSFNQFNGSIPPWLGTLPQLFYIDLSVNHLTGTFPIEFTGLPALTSQQANDKIERTYFELPVFANANNVSLLQYNQLSALPPSLYLGINHLSGSIPIEIGQLKVLLQLGLEENNFSGNIPMQISNLTNLEKLDLSGNHLSGEIPDSLRRLHFLSFFSVANNNLQGQIPTGGQFDTFSSSSFEGNPQLCGSVIQRSCPSQQNNNSNAASGSSNKKVIIGLIIAVCFGIAASVTLLTLWIISKRRVNPGGVPEDKIELESISAYSNNGVHPEVDKEASLVVLFPNKTNETKDLTIYEIIKATENFSQANIIGCGGFGLVYKATLPNGTILAIKKLSGDLGLMEREFKAEVEALSTAQHENLVALQGYCVHDGFRLLIYNYMENGSLDYWLHEKADGASQLDWPTRLKIAQGASCGLAYLHQICEPHIVHRDIKSSNILLDEKFEAHVADFGLSRLILPYHTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGVVMLELLTGRRPVDVCKPKMSRELVGWVQQMRSEGKQDQVFDPLLRGKGYEGEMLQVLDVACMCVSQNPFKRPSIREVVEWLKNVGSANQQRNKD* 1152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01741 1151 SMART serkin_6 867 1138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01741 1151 PRINTS Leucine-rich repeat signature 690 703 - -
Rops4g01741 1151 PRINTS Leucine-rich repeat signature 198 211 - -
Rops4g01741 1151 Gene3D Phosphorylase Kinase; domain 1 831 942 - -
Rops4g01741 1151 SMART LRR_typ_2 170 194 IPR003591 -
Rops4g01741 1151 SMART LRR_typ_2 478 500 IPR003591 -
Rops4g01741 1151 SMART LRR_typ_2 195 219 IPR003591 -
Rops4g01741 1151 SMART LRR_typ_2 557 581 IPR003591 -
Rops4g01741 1151 SMART LRR_typ_2 430 454 IPR003591 -
Rops4g01741 1151 SMART LRR_typ_2 690 714 IPR003591 -
Rops4g01741 1151 SMART LRR_typ_2 381 405 IPR003591 -
Rops4g01741 1151 FunFam Leucine-rich repeat receptor-like kinase 108 226 - -
Rops4g01741 1151 FunFam Tyrosine-sulfated glycopeptide receptor 1 427 765 - -
Rops4g01741 1151 ProSitePatterns Protein kinases ATP-binding region signature. 873 896 IPR017441 GO:0005524
Rops4g01741 1151 Pfam Protein kinase domain 868 1136 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01741 1151 Gene3D Ribonuclease Inhibitor 334 428 IPR032675 -
Rops4g01741 1151 SUPERFAMILY L domain-like 148 278 - -
Rops4g01741 1151 SUPERFAMILY Protein kinase-like (PK-like) 852 1138 IPR011009 -
Rops4g01741 1151 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 88 277 - -
Rops4g01741 1151 Pfam Leucine Rich Repeat 692 713 IPR001611 GO:0005515
Rops4g01741 1151 Gene3D Transferase(Phosphotransferase) domain 1 943 1151 - -
Rops4g01741 1151 SUPERFAMILY RNI-like 230 603 - -
Rops4g01741 1151 ProSitePatterns Serine/Threonine protein kinases active-site signature. 989 1001 IPR008271 GO:0004672|GO:0006468
Rops4g01741 1151 Gene3D Ribonuclease Inhibitor 103 251 IPR032675 -
Rops4g01741 1151 FunFam Leucine-rich repeat receptor-like protein kinase 943 1149 - -
Rops4g01741 1151 Pfam Leucine rich repeat 535 594 IPR001611 GO:0005515
Rops4g01741 1151 Gene3D Ribonuclease Inhibitor 252 333 IPR032675 -
Rops4g01741 1151 ProSiteProfiles Leucine-rich repeat profile. 692 714 IPR001611 GO:0005515
Rops4g01741 1151 SUPERFAMILY L domain-like 636 752 - -
Rops4g01741 1151 Pfam Leucine rich repeat N-terminal domain 106 144 IPR013210 -
Rops4g01741 1151 ProSiteProfiles Protein kinase domain profile. 867 1138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops4g01741 1151 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 835 942 - -
Rops4g01741 1151 Gene3D Ribonuclease Inhibitor 429 769 IPR032675 -
Rops4g01741 1151 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 327 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01741 Rops-Chr4 41458585 41462040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01741 81 789 Miscellaneous Gene Families AT1G17250 52.479 0.0 654
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Rops4g01741 Pkinase 2.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01741 - - gmx:100781943 1727.22