Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops4g01730 | ATGGGAAGCCCATTTCCTATACTAGATTTCATGCCTGTAGGATTCAGATTTCGTCCAACAGATCAAGAGCTTGTGGAACACTACTTGAAACACAAGTTACTAGGTGATGATGATTTCTCTGTCTGCATCATACCTGAGCTTGATCTTTGCAAGCTTGAACCTTGGGACATACCAGCATTTTCAGAGATAAAGTCCGATGAAGAATGGTTTTTCTTCAGTCCTCGTGATTACAAGTATGCAAATAGTAAAAGGTTTAACAGGGCAACTAAGTGTGGATTCTGGAAAGCCACTGGAAATGATCGTAATATAAAGACAAGGGGCACCAACAATGTTGTTGGGACAAAGAAGACTCTTGTTTTCTATCAAGGTCGTGTTCCTCCTGGTGCCAGGACCAATTGGGTCATCCATGAATATCATGCTATTACCTTTGATGATAGCCAGAGGACCTTTGTTTTGTGTCGCCTGATGAAGAAAGCTGAGAAAAAAGCTGAAGGGGGAACTGTTGTATTGAACTGTGATGAAGGGGAGCCCAGTAGCCACATGGCTACTGAGTATGAAAATAAAGCAACAACAGAAGGAATTCAAGATGTAGGTGGTACTTTGCCAGTCTTTCAGACATCGCATCAGGCAGAGAAATATTTCCTCTCAAACCAACAGTCTCCAGTGGGCATTGAGCAGGAATCATCTTTCCCAATCTCCCCATCTGTCCATGCCTATTTTGGAAATGAAAGCAGTAGTATGCAGACTCTATTTGAAACCACTGAAGAGGCCGATGAGTTCTTGAGATCCATTTTAACTGATGGGGATTTTGTTATCAATGAAGAAAGAAGAAATGCTTTTGTCATTGGACCCACTCAATCAGAGTCATTGAGAAGGATACACCGTGAAAGCAGTGACACAGATGCTGAAGTAGTCTCTGCACTGTGTGGCAACATTCTTGAAACTTCAACCATGCATGATGAACATCCTAGATCAGGTGAATATCATGCATCAAAGATGTTGAAATCATCACATGGTGCTGTCCAAGGTAGCACACGTCTTGCATCTTCTAACCATAATGCAAACAAAGAGATAAAGGAGAGTACCCTTCGAGATGATTCATGGGGAGCGGAGACGTCCTCTTGTGACTCAACTACAGGTAAACCCGCGGGGATCAATTGTGTTGAAATTTCTAGTTCTGCTTCCGCTCTAAGGAGATGGAGAAATCAGTATCATTCGAAACCAAACAACTTAATATCACAAAGAGCTGTGGCTAGAAGTTCTCAAACACAAAGGGAGGCTTCAAGCAATTCAGCATCCAATCGTGAGGCTGAGATGGAATCACCAAGTGTGGAATCAGAAAAAGATCAGAAAAAAGCTCAAAATACTAGTTCAAGAGAGAATTTAGAAACCAGAGACCATCAATCCTCTAATGTCAATAGAAAAGGTTCTTTCATCTGCCTGGAGACACCTTCATCAAGCCAAAGCCTGTTTCCTCGCTCGAAAAGGTCCAGAAGCAGCTCTTCTCAGATGAAGAAAAACCATCCAACCCCCACTTTTCTTTCCTCACAAGAACAGAATTTCCAACATTGA | 1572 | 0.4211 | MGSPFPILDFMPVGFRFRPTDQELVEHYLKHKLLGDDDFSVCIIPELDLCKLEPWDIPAFSEIKSDEEWFFFSPRDYKYANSKRFNRATKCGFWKATGNDRNIKTRGTNNVVGTKKTLVFYQGRVPPGARTNWVIHEYHAITFDDSQRTFVLCRLMKKAEKKAEGGTVVLNCDEGEPSSHMATEYENKATTEGIQDVGGTLPVFQTSHQAEKYFLSNQQSPVGIEQESSFPISPSVHAYFGNESSSMQTLFETTEEADEFLRSILTDGDFVINEERRNAFVIGPTQSESLRRIHRESSDTDAEVVSALCGNILETSTMHDEHPRSGEYHASKMLKSSHGAVQGSTRLASSNHNANKEIKESTLRDDSWGAETSSCDSTTGKPAGINCVEISSSASALRRWRNQYHSKPNNLISQRAVARSSQTQREASSNSASNREAEMESPSVESEKDQKKAQNTSSRENLETRDHQSSNVNRKGSFICLETPSSSQSLFPRSKRSRSSSSQMKKNHPTPTFLSSQEQNFQH* | 524 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops4g01730 | 523 | MobiDBLite | consensus disorder prediction | 337 | 356 | - | - | |
Rops4g01730 | 523 | MobiDBLite | consensus disorder prediction | 471 | 523 | - | - | |
Rops4g01730 | 523 | PANTHER | NAC DOMAIN-CONTAINING PROTEIN 82-RELATED | 12 | 413 | - | - | |
Rops4g01730 | 523 | MobiDBLite | consensus disorder prediction | 405 | 439 | - | - | |
Rops4g01730 | 523 | MobiDBLite | consensus disorder prediction | 334 | 385 | - | - | |
Rops4g01730 | 523 | Gene3D | NAC domain | 20 | 163 | IPR036093 | GO:0003677|GO:0006355 | |
Rops4g01730 | 523 | Pfam | No apical meristem (NAM) protein | 12 | 139 | IPR003441 | GO:0003677|GO:0006355 | |
Rops4g01730 | 523 | MobiDBLite | consensus disorder prediction | 405 | 523 | - | - | |
Rops4g01730 | 523 | ProSiteProfiles | NAC domain profile. | 11 | 158 | IPR003441 | GO:0003677|GO:0006355 | |
Rops4g01730 | 523 | MobiDBLite | consensus disorder prediction | 367 | 385 | - | - | |
Rops4g01730 | 523 | SUPERFAMILY | NAC domain | 10 | 158 | IPR036093 | GO:0003677|GO:0006355 | |
Rops4g01730 | 523 | MobiDBLite | consensus disorder prediction | 440 | 470 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops4g01730 | Rops-Chr4 | 41389763 | 41395112 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops4g01730 | 8 | 165 | NAC Transcription Factor Family | AT4G35580 | 53.659 | 1.98e-54 | 190 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | NAC | Rops4g01730 | NAM | 1.4e-34 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops4g01730 | - | - | gsj:114390609 | 525.013 |