Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01730 ATGGGAAGCCCATTTCCTATACTAGATTTCATGCCTGTAGGATTCAGATTTCGTCCAACAGATCAAGAGCTTGTGGAACACTACTTGAAACACAAGTTACTAGGTGATGATGATTTCTCTGTCTGCATCATACCTGAGCTTGATCTTTGCAAGCTTGAACCTTGGGACATACCAGCATTTTCAGAGATAAAGTCCGATGAAGAATGGTTTTTCTTCAGTCCTCGTGATTACAAGTATGCAAATAGTAAAAGGTTTAACAGGGCAACTAAGTGTGGATTCTGGAAAGCCACTGGAAATGATCGTAATATAAAGACAAGGGGCACCAACAATGTTGTTGGGACAAAGAAGACTCTTGTTTTCTATCAAGGTCGTGTTCCTCCTGGTGCCAGGACCAATTGGGTCATCCATGAATATCATGCTATTACCTTTGATGATAGCCAGAGGACCTTTGTTTTGTGTCGCCTGATGAAGAAAGCTGAGAAAAAAGCTGAAGGGGGAACTGTTGTATTGAACTGTGATGAAGGGGAGCCCAGTAGCCACATGGCTACTGAGTATGAAAATAAAGCAACAACAGAAGGAATTCAAGATGTAGGTGGTACTTTGCCAGTCTTTCAGACATCGCATCAGGCAGAGAAATATTTCCTCTCAAACCAACAGTCTCCAGTGGGCATTGAGCAGGAATCATCTTTCCCAATCTCCCCATCTGTCCATGCCTATTTTGGAAATGAAAGCAGTAGTATGCAGACTCTATTTGAAACCACTGAAGAGGCCGATGAGTTCTTGAGATCCATTTTAACTGATGGGGATTTTGTTATCAATGAAGAAAGAAGAAATGCTTTTGTCATTGGACCCACTCAATCAGAGTCATTGAGAAGGATACACCGTGAAAGCAGTGACACAGATGCTGAAGTAGTCTCTGCACTGTGTGGCAACATTCTTGAAACTTCAACCATGCATGATGAACATCCTAGATCAGGTGAATATCATGCATCAAAGATGTTGAAATCATCACATGGTGCTGTCCAAGGTAGCACACGTCTTGCATCTTCTAACCATAATGCAAACAAAGAGATAAAGGAGAGTACCCTTCGAGATGATTCATGGGGAGCGGAGACGTCCTCTTGTGACTCAACTACAGGTAAACCCGCGGGGATCAATTGTGTTGAAATTTCTAGTTCTGCTTCCGCTCTAAGGAGATGGAGAAATCAGTATCATTCGAAACCAAACAACTTAATATCACAAAGAGCTGTGGCTAGAAGTTCTCAAACACAAAGGGAGGCTTCAAGCAATTCAGCATCCAATCGTGAGGCTGAGATGGAATCACCAAGTGTGGAATCAGAAAAAGATCAGAAAAAAGCTCAAAATACTAGTTCAAGAGAGAATTTAGAAACCAGAGACCATCAATCCTCTAATGTCAATAGAAAAGGTTCTTTCATCTGCCTGGAGACACCTTCATCAAGCCAAAGCCTGTTTCCTCGCTCGAAAAGGTCCAGAAGCAGCTCTTCTCAGATGAAGAAAAACCATCCAACCCCCACTTTTCTTTCCTCACAAGAACAGAATTTCCAACATTGA 1572 0.4211 MGSPFPILDFMPVGFRFRPTDQELVEHYLKHKLLGDDDFSVCIIPELDLCKLEPWDIPAFSEIKSDEEWFFFSPRDYKYANSKRFNRATKCGFWKATGNDRNIKTRGTNNVVGTKKTLVFYQGRVPPGARTNWVIHEYHAITFDDSQRTFVLCRLMKKAEKKAEGGTVVLNCDEGEPSSHMATEYENKATTEGIQDVGGTLPVFQTSHQAEKYFLSNQQSPVGIEQESSFPISPSVHAYFGNESSSMQTLFETTEEADEFLRSILTDGDFVINEERRNAFVIGPTQSESLRRIHRESSDTDAEVVSALCGNILETSTMHDEHPRSGEYHASKMLKSSHGAVQGSTRLASSNHNANKEIKESTLRDDSWGAETSSCDSTTGKPAGINCVEISSSASALRRWRNQYHSKPNNLISQRAVARSSQTQREASSNSASNREAEMESPSVESEKDQKKAQNTSSRENLETRDHQSSNVNRKGSFICLETPSSSQSLFPRSKRSRSSSSQMKKNHPTPTFLSSQEQNFQH* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01730 523 MobiDBLite consensus disorder prediction 337 356 - -
Rops4g01730 523 MobiDBLite consensus disorder prediction 471 523 - -
Rops4g01730 523 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 12 413 - -
Rops4g01730 523 MobiDBLite consensus disorder prediction 405 439 - -
Rops4g01730 523 MobiDBLite consensus disorder prediction 334 385 - -
Rops4g01730 523 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Rops4g01730 523 Pfam No apical meristem (NAM) protein 12 139 IPR003441 GO:0003677|GO:0006355
Rops4g01730 523 MobiDBLite consensus disorder prediction 405 523 - -
Rops4g01730 523 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
Rops4g01730 523 MobiDBLite consensus disorder prediction 367 385 - -
Rops4g01730 523 SUPERFAMILY NAC domain 10 158 IPR036093 GO:0003677|GO:0006355
Rops4g01730 523 MobiDBLite consensus disorder prediction 440 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01730 Rops-Chr4 41389763 41395112 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01730 8 165 NAC Transcription Factor Family AT4G35580 53.659 1.98e-54 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops4g01730 NAM 1.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01730 - - gsj:114390609 525.013