Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01726 ATGGGAAGCACATTTCCTATACCAGATTTCATGCCTGTGGGATTCAGATTCCGTCCAACAGATGAAGAGCTTGTGGAACACTACTTGAAACACAAGTTACTAGGTGATGATGATTTCTCTGTCTGCATCATACCTGAGCTTGATCTTTGCAAGCTTGAACCTTGGGACATACCAGCATTTTCAGTAATAAAGTCCGATGACCCAGAATGGTTTTTCTTCAGTCCTCGTGATTACAAGTATGCAAATAGTAAAAGGTTTAACAGGGCAACCAAGTGTGGATTCTGGAAAGCCACTGGAAATGATCGTGATATAAAGACAAGGGGCACCAACAACGTTGTTGGGACAAAGAAGACTCTTGTTTTCTATCAAGGTCGTGTTCCTTCTGGTGTCAGGACCAACTGGGTCATCCATGAATATCATGCTATTACCTTTGATGATAGCCAGAGGACCTTTGTTTTATGTCGCCTGATGAAGAAAGCTGAGAAAAAAGCTGAAGGGGGAACTGATGCATTGAACTGTGATGAAGGGGAGCCCAGTAGCCACATGGCTACTGAGTATGAAAATCAAGCAACAATAGAAGGAATTCAAGATGTAGGTGGTACTTTGCCAGAAATGAATTGGGAATCAATCTTTCAGGAATCGCATCTGGCAGAAAAATATTTCCCCTCAAACCAACAGTCTACCGTTGGCATTGAGCAGGAATCATCTTTCCCAATCTCCCCATCTGTCGATGCCTATTTTGGAAATGAAAGCAGCAGTATGCAGGCTCCATTTGGAACCACTGAAGAGGAAAATGAGTTCTTGAGATCCATTTTAGCTGATGGGGATTTTATTATCAGTGAAGAAAAAAGAAATGCTTTTATCATTGGTTCCACTCAATCAGAGTCATTGAGAAGAAGGATACACCGTGAAAGCAGTGACACACATGTTGAACTAGTCTCTGCACTGTGTGGCAACATTCTTGAAACTTCAACCATGCATGATGAACATCCTAGTTCAGGTGAATATCATGCATCCAAGATGTTTAAATCATCACATGGTGCTGTCCATGGTAGCACACGTCTTGCATCTTCTAACCATAATGCAAACAAAGAGAAAAAGGAGAGTACCCTTCGAGATGATTCATGGGGAACGGATACATCCTCTTTATCATCCGAAACCAAAGAACTTCATATATCACAAAGAGCTGTGGCAAGAGGTTCTCAAACACAAAGGAAGGCTTTAAGCAATTCAGCATCCGATCGTGAGGCTGAGAAGGAATCACCAAGTGTGGAATCAGAAAAAGATCAGAAAAAAGCTCAAAATGCTAGTTCAAGAGAGAATTCAGAAACAAGAAACCATCAATCCTCTAATGTCAATAGAAAAGGTTCTTTCATCTGCCTGGAGACACCTTCATCAAGCCAAAGCCTATTTCCTGTCTTGGTCCAGAAGCAGCTCTTCTCAGATGAAGAAAAACCATCCAACCCCCACTTTTCTTTCCTCACAAGAACAGAAATTCCAACATTGAAGCTCCCCAAACACTGA 1524 0.4173 MGSTFPIPDFMPVGFRFRPTDEELVEHYLKHKLLGDDDFSVCIIPELDLCKLEPWDIPAFSVIKSDDPEWFFFSPRDYKYANSKRFNRATKCGFWKATGNDRDIKTRGTNNVVGTKKTLVFYQGRVPSGVRTNWVIHEYHAITFDDSQRTFVLCRLMKKAEKKAEGGTDALNCDEGEPSSHMATEYENQATIEGIQDVGGTLPEMNWESIFQESHLAEKYFPSNQQSTVGIEQESSFPISPSVDAYFGNESSSMQAPFGTTEEENEFLRSILADGDFIISEEKRNAFIIGSTQSESLRRRIHRESSDTHVELVSALCGNILETSTMHDEHPSSGEYHASKMFKSSHGAVHGSTRLASSNHNANKEKKESTLRDDSWGTDTSSLSSETKELHISQRAVARGSQTQRKALSNSASDREAEKESPSVESEKDQKKAQNASSRENSETRNHQSSNVNRKGSFICLETPSSSQSLFPVLVQKQLFSDEEKPSNPHFSFLTRTEIPTLKLPKH* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01726 507 MobiDBLite consensus disorder prediction 439 455 - -
Rops4g01726 507 Gene3D NAC domain 20 164 IPR036093 GO:0003677|GO:0006355
Rops4g01726 507 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 401 - -
Rops4g01726 507 MobiDBLite consensus disorder prediction 375 410 - -
Rops4g01726 507 MobiDBLite consensus disorder prediction 343 455 - -
Rops4g01726 507 Pfam No apical meristem (NAM) protein 12 140 IPR003441 GO:0003677|GO:0006355
Rops4g01726 507 ProSiteProfiles NAC domain profile. 11 159 IPR003441 GO:0003677|GO:0006355
Rops4g01726 507 MobiDBLite consensus disorder prediction 360 374 - -
Rops4g01726 507 MobiDBLite consensus disorder prediction 411 438 - -
Rops4g01726 507 SUPERFAMILY NAC domain 10 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01726 Rops-Chr4 41348229 41363217 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01726 11 166 NAC Transcription Factor Family AT4G35580 57.143 5.69e-59 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops4g01726 NAM 1.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01726 - - gsj:114390609 486.878