Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01725 ATGGGAAGCACATTTCCTATACCAGATTTCATGCCTTTGGGATTCAGATTCCGTCCAACAGATGAAGAGCTTGTGGAACACTACTTGAAACACAAGTTACTAGGTGATGATGATTTCTCTGTCTGCATCATACCTGAGCTTGATCTTTGCAAGCTTGAACCTTGGGACATACCAGCATTTTCAGTAATAAAGTCCGATGACCCAGAATGGTTTTTCTTCAGTCCTCGTGATTACAAGTATGCAAATAGTAAAAGGTTTAACAGGGCAACCAAGTGTGGATTCTGGAAAGCCACTGGAAATGATCGTGATATAAAGACAAGGGGCACCAACAACGTTGTTGGGACAAAGAAGACTCTTGTTTTCTATCAAGGTCGTGTTCCTTCTGGTGTCAGGACCAACTGGGTCATCCATGAATATCATGCTATTACCTTTGATGATAGCCAGAGGACCTTTGTTTTATGTCGCCTGATGAAGAAAGCTGAGAAAAAAGCTGAAGGGGGAACTGATGCATTGAACTGTGATGAAGGGGAGCCCAGTAGCCACATGGCTACTGAGTATGAAAATCAAGCAACAACAGAAGGAATTCAATATGTAGGTGGTACTTTGCCAGAAATGAATAGGGAATCAATCTTTCAGGAATCGCATCTGGCAGAAAAATATTTCCCCTCAAACCAACAGTCTCCCGTTGGCATTGAGCAGGAATCATCTTTCCCAATCTCCCCTGTCGATGCCTATTTTGGAAATGAAAGCAGCAGTATGCAGACTCCATTTGGAACCACTGAAGAGGAAAATGAGTTCTTGAGATCCATTTTAGCTGATGGGGATTTTGTTATCAGTGAAGAAAAAAGAAATGCTTTTGTCATTGGTTCCATTCAATCAGATTCATTGAGAAGGATACACAGTGAAAGCAGTGACACACATGCTGAACTAGTCTCTGCACTGTGTGGCAACATTCTTGAAACTTCAACCATGCATGATGAACATCCTAGTTCAGGTGAATATCATGCATCCAAGATGTTTAAATCATCACATGGTGCTGTCCATGGTAGCACACGTCTTGCATCTTCTAACCATAATGCAAACAAAGAGAAAAAGGAGAGTACCCTTCGAGATGATTCATGGGGAACGGATACATCCTCTTTATCATCCGAAACCAAAGAACTTCATATATCACAAAGAGCTGTGGCAAGAAGTTCTCAAACACAAAGGAAGGCTTTAAGCAATTCAGCATCCGATCGTGAGGCTGAGAAGGAATCACCAAGTGTGGAATCAGAAAAAGATCAGAAAAAAGCTCAAAATGCTAGTTCAAGAGAGAATTCAGAAACAAGAAACCATCAATCCTCTAATGTCAATAGAAAAGGTTCTTTCATCTGCCTGGAGACACCTTCATCAAGCCAAAGCCTATTTCCTGTCTTGGTCCAGAAGCAGCTCTTCTCAGATGAAGAAAAACCATCCAACCCCCACTTTTCTTTCCTCACAAGAACAGAAATTCCAACATTGAAGCTCCCCAAACACTGA 1518 0.4163 MGSTFPIPDFMPLGFRFRPTDEELVEHYLKHKLLGDDDFSVCIIPELDLCKLEPWDIPAFSVIKSDDPEWFFFSPRDYKYANSKRFNRATKCGFWKATGNDRDIKTRGTNNVVGTKKTLVFYQGRVPSGVRTNWVIHEYHAITFDDSQRTFVLCRLMKKAEKKAEGGTDALNCDEGEPSSHMATEYENQATTEGIQYVGGTLPEMNRESIFQESHLAEKYFPSNQQSPVGIEQESSFPISPVDAYFGNESSSMQTPFGTTEEENEFLRSILADGDFVISEEKRNAFVIGSIQSDSLRRIHSESSDTHAELVSALCGNILETSTMHDEHPSSGEYHASKMFKSSHGAVHGSTRLASSNHNANKEKKESTLRDDSWGTDTSSLSSETKELHISQRAVARSSQTQRKALSNSASDREAEKESPSVESEKDQKKAQNASSRENSETRNHQSSNVNRKGSFICLETPSSSQSLFPVLVQKQLFSDEEKPSNPHFSFLTRTEIPTLKLPKH* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01725 505 Pfam No apical meristem (NAM) protein 12 140 IPR003441 GO:0003677|GO:0006355
Rops4g01725 505 ProSiteProfiles NAC domain profile. 11 159 IPR003441 GO:0003677|GO:0006355
Rops4g01725 505 MobiDBLite consensus disorder prediction 437 453 - -
Rops4g01725 505 MobiDBLite consensus disorder prediction 373 408 - -
Rops4g01725 505 MobiDBLite consensus disorder prediction 341 453 - -
Rops4g01725 505 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 398 - -
Rops4g01725 505 MobiDBLite consensus disorder prediction 358 372 - -
Rops4g01725 505 SUPERFAMILY NAC domain 10 159 IPR036093 GO:0003677|GO:0006355
Rops4g01725 505 MobiDBLite consensus disorder prediction 409 436 - -
Rops4g01725 505 Gene3D NAC domain 20 164 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01725 Rops-Chr4 41327326 41342403 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01725 11 166 NAC Transcription Factor Family AT4G35580 57.764 1.24e-59 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops4g01725 NAM 4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01725 - - gsj:114390609 491.886