Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01722 ATGCCTGTGGGATTCAGATTCCGTCCAACAGATGAAGAGCTTGTGGAACACTACTTGAAACACAAGTTACTAGGTGATGATGATTTCTCTGTCTGCATCATACCTGAGCTTGATCTTTGCAAGCTTGAACCTTGGGAAATACCAGCATTTTCAGTGATAAAGTCCGATGACCCAGAATGGTTTTTCTTCAGTCCTCGTGATTACAAGTATGCAAATAGTAAAAGGTTTAACAGGGCAACCAAGTGTGGATTCTGGAAAGCCACTGGAAATGATCGTGATATAAAGACAAGGGGCACCAACAATGTTGTTGGGACAAAGAAGACTCTTGTTTTCTATCAAGGCCGTGTTCCTTCTGGTGTCAGGACCAACTGGGTCATCCATGAATATCATGCTATTACCTTTGATGATAGCCAGAGGACCTTTGTTTTGTGTCGCCTGATGAAGAAAGCTGAGAAAAAAGCTGAAGGGGGAACTGATGCATTGAACTGTGATGAAGGGGAGCCCAGTAGCCACATGGCTACTGAGTATGAAAATCAAGCAACAACAGAAGGAATTCAAGATGTAGGTGGTACTTTGCCAGAAATGAATTTGGAAACAGTCTTTCAGGAATCGCATCAGGCAGAGAAATATTTCCCCTCAAACCAACAGTCTCCAGTTGGCATGGAGCAGGAATCATCTTTCCTAATCTCCCCATCTGTCGATGCCTATTTTGGAAATGAAAGCAACAGTATGCAGACTCCATTTAAAACCACTGAAGAGGCAGATGAGTTCGTGAAATCAATGTTAGCTGATGGGGATTCTGTTATCAGTGAAGAAAGAAGAAATGCTTCCACTCAATCAGATTCATTGAAAAGGATATACTGTGAAAGCAGTGACACAGATGCTGAAGTAGTCTCTGCACTGTGTGGCAATATTCTGGATACTTCAACCATGCATGATGAACATCCTAGTTCAGGTGAATATCATGCATCAAAGATGTTTAAATCATCACATGGTGCTGACCGTGGTAGCACACGTATTGCATCTTCTAACCATAATGCAAACAAAGAGAAAAAGGAGAGTACCCTTCAAGATGATTTATGGGGAGTGGAGACATCCTCTTGTGACTCAACTGCAGATAAACCTTTGGGGATCAATTGTGTTGAAATTTCTAGTTCTCCTTCCACTCTAAGGAGAGGGAAAAATCAGTATCATCCGAAACCAGACAACTTCATATCACTGAGAGCTGTGGCAAGAAGTTCTCAAACACAATGGAAGGCTTCAAGCATTTCTGTATCCCATCTTGAGGCTAAGAAGGAATCACCAAGTATGGAATCAGAAAAAGATCAGAAAAAAGCTCAAAATGCTAGTTCAAGAGAGAATTTAGAAACAAGAAACCATCAATCCTCTAATGTCAATAGAAAAGGATACAGATTCCATCCAACAGATGAAGAGCTTGTGGGTCACTACTTGAAACACAAGTTACTTGGTAATCATTCTATGGTGCACAATGTCATAGCTGAGCTTGATGTTTGCAAGTTTGAACCTTGGGAACTACCAGCATTTTCCAAGGTAAAATCAGATGACCCAGAATGGTTTTTCTTCAGCCCTCTTGGTTTGAAGTTCACAAAAAGCACAAGGTGTAACAGGAAAACCAAGACTGGTTACTGGAAGATCACTGGTAAAGACCGTAGCATAAAGACCAGAGGCACCAACAATGTCATTGGCACCAAGAAGACTCTTGTTTTCTACAAGAGTTGTGATCATCGTCGTGTCAGGACCAATTGGGTCATTCACGAATATCATGCAGTTACCTTTCCTGATGACAAGAGAGGTTTTGTCTTGTGTCGCTTAATGGAGAAAGCTGAGAAAAAAGCAGAAAGGGGAACTGATGCATTCATACTCGATGAAGGGGAGCCAAATAGCCATATTGCTGCTGACTATGAAAACCAAACAACAGCAGATAGGGATCCATATGTGAGCAGAAGCATCTGGGAATATGCTTCGCCAGAAGTGAATCTGGAATCATTCTTTTTAGCACAACCTCAGGCAGAGGACTATGGCTTTCCCTTGCTACATCAGTCTCCAATTGTCATTGAACAGGAACCGTATTTCCAAGGTTCCACAGTTCCCAATGCCTATTTTGGGGATGAAAACACTATTATACAGTTTCCATTTGAAACTACTGAAGAGCAAGAGAATATTGATTCATTCTTGGATTTGGATTCAATGTTAGCTGATGAGGATGTTTTTAGCATTGAAGAAATAACACCTGCTTTTGTTAATGATTCCACCCTCCCAAAGTTTTTGAGAAAGAGGCACTATGAAAGCAGTGAAGCAGATATTACAGTACTCTCTGCACGGCATGGCAACAATATTCTGCAAACTACTTCATCAGTGTGGAATGAACATACTGATTCAAGGGAAAACCCAGCAGCACTGTCAATGGTTGAGTCATCACATGATGCTGTTTATGCTGGCCTTCGTCCAGTGTCATCTAAAAGTGAAGTAAACCTAGAGGAAGAGGACAATACCTTTTATGACAATTCAACTGCAAATGCATGTTTATCTATTTTCCTTCTTCAAAGGGTTAGCTCTCCTCCACCTCAGTCTAGACTCCTTCGCCTTCGAGGTCTAGCTCTTATTCGCCTCCAATAA 2637 0.4141 MPVGFRFRPTDEELVEHYLKHKLLGDDDFSVCIIPELDLCKLEPWEIPAFSVIKSDDPEWFFFSPRDYKYANSKRFNRATKCGFWKATGNDRDIKTRGTNNVVGTKKTLVFYQGRVPSGVRTNWVIHEYHAITFDDSQRTFVLCRLMKKAEKKAEGGTDALNCDEGEPSSHMATEYENQATTEGIQDVGGTLPEMNLETVFQESHQAEKYFPSNQQSPVGMEQESSFLISPSVDAYFGNESNSMQTPFKTTEEADEFVKSMLADGDSVISEERRNASTQSDSLKRIYCESSDTDAEVVSALCGNILDTSTMHDEHPSSGEYHASKMFKSSHGADRGSTRIASSNHNANKEKKESTLQDDLWGVETSSCDSTADKPLGINCVEISSSPSTLRRGKNQYHPKPDNFISLRAVARSSQTQWKASSISVSHLEAKKESPSMESEKDQKKAQNASSRENLETRNHQSSNVNRKGYRFHPTDEELVGHYLKHKLLGNHSMVHNVIAELDVCKFEPWELPAFSKVKSDDPEWFFFSPLGLKFTKSTRCNRKTKTGYWKITGKDRSIKTRGTNNVIGTKKTLVFYKSCDHRRVRTNWVIHEYHAVTFPDDKRGFVLCRLMEKAEKKAERGTDAFILDEGEPNSHIAADYENQTTADRDPYVSRSIWEYASPEVNLESFFLAQPQAEDYGFPLLHQSPIVIEQEPYFQGSTVPNAYFGDENTIIQFPFETTEEQENIDSFLDLDSMLADEDVFSIEEITPAFVNDSTLPKFLRKRHYESSEADITVLSARHGNNILQTTSSVWNEHTDSRENPAALSMVESSHDAVYAGLRPVSSKSEVNLEEEDNTFYDNSTANACLSIFLLQRVSSPPPQSRLLRLRGLALIRLQ* 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01722 878 MobiDBLite consensus disorder prediction 416 471 - -
Rops4g01722 878 Gene3D NAC domain 475 619 IPR036093 GO:0003677|GO:0006355
Rops4g01722 878 Pfam No apical meristem (NAM) protein 2 130 IPR003441 GO:0003677|GO:0006355
Rops4g01722 878 Pfam No apical meristem (NAM) protein 468 595 IPR003441 GO:0003677|GO:0006355
Rops4g01722 878 MobiDBLite consensus disorder prediction 452 469 - -
Rops4g01722 878 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 271 - -
Rops4g01722 878 MobiDBLite consensus disorder prediction 431 451 - -
Rops4g01722 878 ProSiteProfiles NAC domain profile. 1 149 IPR003441 GO:0003677|GO:0006355
Rops4g01722 878 Gene3D NAC domain 10 154 IPR036093 GO:0003677|GO:0006355
Rops4g01722 878 MobiDBLite consensus disorder prediction 328 358 - -
Rops4g01722 878 SUPERFAMILY NAC domain 467 613 IPR036093 GO:0003677|GO:0006355
Rops4g01722 878 ProSiteProfiles NAC domain profile. 466 614 IPR003441 GO:0003677|GO:0006355
Rops4g01722 878 SUPERFAMILY NAC domain 1 149 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01722 Rops-Chr4 41310920 41321550 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01722 469 619 NAC Transcription Factor Family AT4G35580 52.564 1.69e-45 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops4g01722 NAM 1.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01722 - - gsj:114390609 540.421