Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01721 ATGAAAAGTTACTTCATACTCTTCTTAACTTTTTCTTCTTTTATTATATTTGCAAATTATACTCCAATGGTGGAAATAGTTCCTATAGGATACAGATTCCATCCAACAGATGAAGAACTTGTGGGTCACTACTTGAAACACAAGTTACTTGGTAATGGTTTTATGGTGCAAAATATCATAGCTGAGCTTGATGTTTGCAAGTTTGAACCTTGGGACTTACCAGCATTTTCCAAGGTAAAATCGGATGACCCAGAATGGTTTTTCTTCAGCCCTCTTGGTTTGAAGTTCACAAAAAGCACAAGGTGTAACAGGAAAACCAAGACTGGTTACTGGAAGATCACTGGTAAAGACCGTAGCATAAAGACCAGAGGCACCAACAATGTCATTGGCACCAAGAAGACTCTTGTTTTCTACAAGAGTTGTGGTCATCATCGTGTCAGGACTAATTGGGTCATTCATGAATATCATGCAGTTACCTTTCCTGATGACAAGAGAGTTTTTGTCTTGTGTCGCTTAACGGAGAAAGCTGAGAAAAAAGCAGATGGAGGGACCGATGAAGGGGAGCCAAGTAGCCATATTGCTGCTGACTTTGAAAATCAAGCAATAGCAGATAGGGATCCAGATGTATATGCTTCGCCAGAAGTGAATCTGGAATTATTCTTTCTAGCACCACCTCAGGCAGAGGAATATGGCTTTCCCTTGCTACATCAGTCTCCAATTGTCATTGAACAGGAACCATACTTCCAAGGTTCCACATTTCCCAATGCCTGTTTTGGAAACGGAAACAGCATTATACAGTTTCCATGTGAAGCTACTGAAGAGGAAGACAATATTGATTCATTCTTGGATTCAATTTTAGCTGACGAGGATGTTTTTATCAGTGAAGATATATCACCTGCTTTTGTTAATTCTTTGACAAAGATGTGTTATGAAAGCAGTGAATCAGATGATGAACTACCCCTCCCAAAGTCCTTGAGAAAGGTGTATTATGAAAGCAGTGAAACAAATGTTGAACTACTCTCTGCACAGATGCCAATAGAGAACGGTTATGTTACACCACCCTCTTCTCCACCTACGTATGAATTACCTCCAATTCTGACAAAGACCACCATGATAACTGTTTTGGACTCTGCGATCAATCTGCTTTGTCGACTAAGGTGCTTAGTCCGCAACAAGCCACCAGGATCTCTTCTTGTGTAG 1200 0.4033 MKSYFILFLTFSSFIIFANYTPMVEIVPIGYRFHPTDEELVGHYLKHKLLGNGFMVQNIIAELDVCKFEPWDLPAFSKVKSDDPEWFFFSPLGLKFTKSTRCNRKTKTGYWKITGKDRSIKTRGTNNVIGTKKTLVFYKSCGHHRVRTNWVIHEYHAVTFPDDKRVFVLCRLTEKAEKKADGGTDEGEPSSHIAADFENQAIADRDPDVYASPEVNLELFFLAPPQAEEYGFPLLHQSPIVIEQEPYFQGSTFPNACFGNGNSIIQFPCEATEEEDNIDSFLDSILADEDVFISEDISPAFVNSLTKMCYESSESDDELPLPKSLRKVYYESSETNVELLSAQMPIENGYVTPPSSPPTYELPPILTKTTMITVLDSAINLLCRLRCLVRNKPPGSLLV* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01721 399 Gene3D NAC domain 36 180 IPR036093 GO:0003677|GO:0006355
Rops4g01721 399 SUPERFAMILY NAC domain 18 174 IPR036093 GO:0003677|GO:0006355
Rops4g01721 399 ProSiteProfiles NAC domain profile. 27 175 IPR003441 GO:0003677|GO:0006355
Rops4g01721 399 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 26 198 - -
Rops4g01721 399 Pfam No apical meristem (NAM) protein 28 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01721 Rops-Chr4 41299533 41303962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01721 24 182 NAC Transcription Factor Family AT4G35580 50.909 3.95e-48 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops4g01721 NAM 1.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01721 - - ccaj:109803958 379.407