Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01718 ATGGAGTTGATTCAAGAAGTGAAAGGGTATTCTGATAGCAGAGAAGAGGAAGAAGAAGAGGAAGCAGCTGAAGAAATCATCACAAGAGAAGAAAGTAGCAGTAAGCATCACTGCCCCTCTTTCTCTTTCTCTTCTTCTCCTTCAATAACAAATTACACTACAAGTCATCCTCATCATCATGTAATAAAAATTCCTCACCAACAAAATTCATGGTTGGGGATGATTCATGATCAGTCTCCAGAGGCCATTGAATCTCACAATTCATCATCTGGGTTAGGGTTATTACACCAGCACCAAGATGCAGCAGCTTCCAATTTCATCAATCACACAAAGCAGATAGATTTCATGGAATTGTCTCTTGGGAACAACAAGGATGTCAGTGATGAAGCCAATTTCCAACAACAAGGATCAGGAGCTGCTGTTCCTCCTCCTCCTCCTCCTCATGTTTATGCTCATGCAACTTCTAGTTCTTCTGCCAACAGTAACCAACCTACTGAGAAAGAGCACATGTTTGATAAAGTTGTGACACCAAGTGATGTGGGAAAGCTCAACCGTTTGGTGATACCAAAACAGCATGCTGAGAAGTACTTCCCCCTTGATTCCTCAGCCAATGAGAAAGGCCTTCTCCTCAATTTTGAAGACAGGAATGGCAAATCGTGGAGGTTCAGGTACTCTTATTGGAATAGCAGCCAGAGCTATGTGATGACCAAAGGATGGAGCCGTTTTGTGAAGGAGAAGAAGCTAGATGCTGGTGACATTGTGTCCTTCCAACGTGGTGTTGGTGAATTGTATAGGCATAGGTTATACATAGATTGGAGGAGAAGACCTGATCATGGCCCTGATCCATCAACCACACTCTTCACACCTTTTTTTCTTCCCAATCAGCCGCACTTGTCACAATACTCTATCAGGTGGGGTGCCACTGGTAGATTGTACTCACATCCTTCCCCACAAGCACCAAGGCACCATGACCCTTTGCAGCAGCTCAATTACAACCACATGTATCCCTTTCATCACCAACAACATGGTGGTGGTGGTGGTGGTGGTGGGAGTCACCACTACAACAACTACCATGAGTTGAGTTCAGGATCTGGGCCAGTCTATTACTTGAGGTCAGCACCATCATTGCCAATGGCTGATCAAAGCTTGACAACAAGGCGGCAACAACAACAAGAAGGAAGCAATATTGCTCCCATGATCATTGATTCTGTTCCAGTTGTTCATCATCATCATCAACAAGGTGGTTCTAGTAGTAGTACTAGTACTACAGCAAAACGGTTAAGGCTATTTGGGGTGAACATGGAATGTGGTTCTTCAACATCTGAAGACCCCAAATGTTGTAACTTGTTGTCCTCAACTTCAGTAACGCATGTGACAATGGCTAATTCACTTCCCTCTTCTTCTCTACCACCTCTTCAACGTTTGAGGGTACCCCATGAAGACACACTTTCACAATCAGCAAGGATTGAGGAACAAAGAGGGGAAGCTTCAATGCTTTTTGGTTTAGACCCTTCTTTGCAATACCGGCAGTGA 1533 0.441 MELIQEVKGYSDSREEEEEEEAAEEIITREESSSKHHCPSFSFSSSPSITNYTTSHPHHHVIKIPHQQNSWLGMIHDQSPEAIESHNSSSGLGLLHQHQDAAASNFINHTKQIDFMELSLGNNKDVSDEANFQQQGSGAAVPPPPPPHVYAHATSSSSANSNQPTEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSANEKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGELYRHRLYIDWRRRPDHGPDPSTTLFTPFFLPNQPHLSQYSIRWGATGRLYSHPSPQAPRHHDPLQQLNYNHMYPFHHQQHGGGGGGGGSHHYNNYHELSSGSGPVYYLRSAPSLPMADQSLTTRRQQQQEGSNIAPMIIDSVPVVHHHHQQGGSSSSTSTTAKRLRLFGVNMECGSSTSEDPKCCNLLSSTSVTHVTMANSLPSSSLPPLQRLRVPHEDTLSQSARIEEQRGEASMLFGLDPSLQYRQ* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01718 510 MobiDBLite consensus disorder prediction 1 42 - -
Rops4g01718 510 Gene3D - 165 280 IPR015300 -
Rops4g01718 510 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 15 444 IPR044800 GO:0003700
Rops4g01718 510 SUPERFAMILY DNA-binding pseudobarrel domain 167 270 IPR015300 -
Rops4g01718 510 MobiDBLite consensus disorder prediction 151 165 - -
Rops4g01718 510 ProSiteProfiles B3 DNA-binding domain profile. 171 276 IPR003340 GO:0003677
Rops4g01718 510 FunFam B3 domain-containing protein 164 285 - -
Rops4g01718 510 CDD B3_DNA 169 258 IPR003340 GO:0003677
Rops4g01718 510 Pfam B3 DNA binding domain 171 275 IPR003340 GO:0003677
Rops4g01718 510 SMART B3_2 171 276 IPR003340 GO:0003677
Rops4g01718 510 MobiDBLite consensus disorder prediction 128 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01718 Rops-Chr4 41256941 41258473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01718 161 439 RAV Transcription Factor Family AT2G46870 50.877 7.23e-81 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops4g01718 B3 3.3e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01718 K09287 - gmx:100781424 517.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01718 4 41256941 41258473 Rops4g01718 4 41256941 41258473 ECH