Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01713 ATGGACGCATACTCCTCTGGCGAAGAAGTGATTGTTAAGACCAGAAAGCCATACACAATCACAAAGCAAAGAGAACGATGGACAGAGGAGGAGCATAATAGGTTTCTTGAAGCTCTGAAGCTACATGGGCGGGCATGGCAGCGCATAGAAGAGCATATAGGAACAAAGACTGCTGCGCAAATCAGGAGCCATGCCCAGAAGTTCTTTACAAAGTTGGAGAAAGAGGCCCTTGTAAAGGGAGTTCCAATTGGACAAGCGCTTGACATAGACATTCCCCCTCCACGGCCCAAAAGAAAACCAAGCAATCCTTATCCTCGGAAGATCAGTATTAGTACCACAACATTACATGGTGGAGCAAAGGATGGAAAACTCAATTCAGTTGGATCTTCACATGTTAAACCAGCACTGGACTTGGAAAAAGAACCACCGCCAGAGAAACATGATTTAGACCAAGGGCCAACAACTGTGAAAGAAAATAAGGATGAAAACCGGTCAAAAGTATTTACTGTTCTTCAGGAGATACCCTGTTCCTCTGCATGTTCAGCAAACAAGAGTTCAATATCAATGTCATTGCCACTGGGAAATTCATGCACCTTAAAGGAGATTACACCTTCAGTGAAAGAGGTAATAGCACGAGATGAAACAAATGAATCTTTTATAACTATTGAACTTGAAAATAGGAAGTTGGAGAAAGATGATGGTAAACAGACTAATGGCAGTAGTAAAGACTCCAAGTTGGAGAATTCTGATGCTTCACAAGTGAAATTGGTTCAAAATGAGAAAACTGATGATGGTCTTAATTGCGCATTAACAATAGATGGGATGCAAGGCAATCAGAATTACCCTCGACATGTTACTGTGCACATTGTTGATGGGAACCTTGGAACAAGTACTCAAAATTCACCCCAAGATACGTTGTTTCGAGACTCCATATTTCAGCCGGTAGGAGGGGTTAATGGGCAACCTAATCATTTCACCAACTCACTTGCATCAAACACAAGTGAAAGTCAAAATAACACAGCACGATCTTCTTCTATTCATCAATCATTTCTTCCTTATCCTCCCTTCACACAACATAATCAAGATGATTACCAATCATTTCTTCACATGTCCTCCACATTTTCAAATCTTATTGTCTCTACCTTGCCGCAAAACCCAGCAGCCCATGCTGCAGCAAGTTTTGCTGCTACATTTTGGCCCTATGCAAGTCCAGAAGCTTCAGCAGATTCTCCTAGGTACTCCCAAGGAGGTTTTCCATCTAGGCAAATTGGCTCCCCTCCTAGTGTAGCAGCTATTGCAGCTGCTACTGTAGCTGCTGCAACAGCATGGTGGACAGCTCATGGATTGCTTCCTTTGTGTGCTCCTGTCCATACTGCTTTTGCCTGTCCTCCTGCATCGGTGACTACTGCAGTTCCATCAATGAATACTGGTGAAGCACCAGCACCGAAGACAGAGCAAGAAAAGACTACTCCACAAAATCCTCCTCTGCAAGATCAGATACTGGATCCAGAACACTCGGAAGCTCAACAAGCTCAACATTCAGCTTCTAAGTCACCAGCTGTTACATCATCAGATTCTGAGAATGGAGATGCCAAGTTAAATACTTCATCAAAGGCTACTGATCATGAGATGAACAAAGCAATTTCTGAGCACCTTGATCCCAACCAAACGGAGGGCAGAAAACAGGTTGACCGTTCCTCATGTGGTTCCAACACAGCCTCTAGCAGCGAAGTGGAGACTGATGCATTAGAGAAGGATGAGAAAGGGAAAGAAGAGCCTGAAACACTTGATGCTGACAATTTAGCCACTGAGTTTAGTAATCGTCGTAGTAGAAGCATTAGCAACCTTACTGATTCTTGGAAGGAGGTCTCCGAAGAGGGGCGACAAGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCTCAAAGCTTTTCACCTCCGTATGATTTGAAAAATATGGATCAGCTAATGGACAACATCAAGGATAACAAGCAAATCCCAGATGACAAAGATGAAGAAGACCTTGACAGCCAGAAATGCAGCTCTAATTATGAAGGAATGCACAACAACTTACCATCTGTAGAAAATAACGAGGAGGGACTGCTAACCATAGGGCTTGGACAAGGAAAGCTTAAGACTCGTCGAACAGGCTTTAAACCCTACAAAAGATGCTCCATGGAGGCCAAGGAAAACAGGGTTGGAACGACCAGCAACCAAGGTGAAGAGAAAGGTTGTAAGAGAATACGCTTGGAAGGGGAGGCTTCAACTTGA 2271 0.4373 MDAYSSGEEVIVKTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKTAAQIRSHAQKFFTKLEKEALVKGVPIGQALDIDIPPPRPKRKPSNPYPRKISISTTTLHGGAKDGKLNSVGSSHVKPALDLEKEPPPEKHDLDQGPTTVKENKDENRSKVFTVLQEIPCSSACSANKSSISMSLPLGNSCTLKEITPSVKEVIARDETNESFITIELENRKLEKDDGKQTNGSSKDSKLENSDASQVKLVQNEKTDDGLNCALTIDGMQGNQNYPRHVTVHIVDGNLGTSTQNSPQDTLFRDSIFQPVGGVNGQPNHFTNSLASNTSESQNNTARSSSIHQSFLPYPPFTQHNQDDYQSFLHMSSTFSNLIVSTLPQNPAAHAAASFAATFWPYASPEASADSPRYSQGGFPSRQIGSPPSVAAIAAATVAAATAWWTAHGLLPLCAPVHTAFACPPASVTTAVPSMNTGEAPAPKTEQEKTTPQNPPLQDQILDPEHSEAQQAQHSASKSPAVTSSDSENGDAKLNTSSKATDHEMNKAISEHLDPNQTEGRKQVDRSSCGSNTASSSEVETDALEKDEKGKEEPETLDADNLATEFSNRRSRSISNLTDSWKEVSEEGRQAFQALFSREVLPQSFSPPYDLKNMDQLMDNIKDNKQIPDDKDEEDLDSQKCSSNYEGMHNNLPSVENNEEGLLTIGLGQGKLKTRRTGFKPYKRCSMEAKENRVGTTSNQGEEKGCKRIRLEGEAST* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01713 756 MobiDBLite consensus disorder prediction 317 352 - -
Rops4g01713 756 MobiDBLite consensus disorder prediction 579 597 - -
Rops4g01713 756 MobiDBLite consensus disorder prediction 561 578 - -
Rops4g01713 756 MobiDBLite consensus disorder prediction 661 695 - -
Rops4g01713 756 MobiDBLite consensus disorder prediction 600 614 - -
Rops4g01713 756 MobiDBLite consensus disorder prediction 105 119 - -
Rops4g01713 756 MobiDBLite consensus disorder prediction 472 535 - -
Rops4g01713 756 FunFam protein REVEILLE 6 isoform X1 26 74 - -
Rops4g01713 756 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Rops4g01713 756 MobiDBLite consensus disorder prediction 536 560 - -
Rops4g01713 756 MobiDBLite consensus disorder prediction 134 163 - -
Rops4g01713 756 MobiDBLite consensus disorder prediction 472 614 - -
Rops4g01713 756 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Rops4g01713 756 MobiDBLite consensus disorder prediction 86 163 - -
Rops4g01713 756 Pfam Myb-like DNA-binding domain 24 67 IPR001005 -
Rops4g01713 756 Gene3D - 26 73 - -
Rops4g01713 756 ProSiteProfiles SANT domain profile. 22 73 IPR017884 -
Rops4g01713 756 MobiDBLite consensus disorder prediction 230 251 - -
Rops4g01713 756 MobiDBLite consensus disorder prediction 742 756 - -
Rops4g01713 756 NCBIfam myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
Rops4g01713 756 MobiDBLite consensus disorder prediction 680 695 - -
Rops4g01713 756 MobiDBLite consensus disorder prediction 661 679 - -
Rops4g01713 756 SMART sant 23 71 IPR001005 -
Rops4g01713 756 CDD SANT 26 69 IPR001005 -
Rops4g01713 756 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Rops4g01713 756 MobiDBLite consensus disorder prediction 729 756 - -
Rops4g01713 756 PANTHER SWI/SNF COMPLEX-RELATED 7 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01713 Rops-Chr4 41157382 41168989 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops4g01713 Myb_DNA-binding 2.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01713 K12133 - gmx:100271888 1189.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01713 4 41157382 41168989 Rops4g01713 4 41157382 41168989 ECH