Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01711 ATGGAAACCCATCCAAAGCTTAATGGTGTGGAAGCAGAACAAGTCCCACAAAGAAAGGGAGAGCCAGACCCAGATGCTGAAGCAGAAAGCTTCTGCTATGCCCTTCAGCTGGTGAATTCTGCAGCACTGCCCATGTCCTTGCACACTGCCTTGGAACTTGGTGTGTTAGATATAATACATAAAACAGGTCCAGGTGCCAAGGTCTCAGCCAAGGACATTGTAGCACAAATTCCCACCAAGAACCCTGATGCAGCCACAATGATAGATAGGATCCTCATGCTTCTAGCTAGTCACTCTGTGCTTGATTGTTCTGTTGCTGCTGAGGATGATGAAAGTGGTTCTTTCAAGAGATTATACAGTCTAAACTCTGTATCTAAATATTTTGTGCCCAGTGAGGATGGGGTGTCATTGAAGCCACTCATGGCATTGCTTCAAGACAAGATCTTCATACAAAGCTGGTCTCAATTGAAAGGGGCAATCTTGGAAGGGGGTATACCCTTCAACAGAGTTCATGGCATGCATGCCTTTGAGTATCCCAGCATAGACCTCAGGTACAATCAAGTTTTTAACGCAGCAATGAGCAACACCACATGTTTGGCTGCAAAGAACATTGTTGAACGCTACAAAGGCTTTGAGCACATCAATATACTGGTAGATGTTGGAGGTGGTCTTGGAACTACCATTAGTTTCATCATTTCCAAATACCCGCATATTCAGGGTATTAATTTCGACTTGCCTCATGTCATCAAGGAAGCTCCTTCACATCCTGGTGTGAAGCATGAGGGAGGGGATATGTTTGAAAGTGTTCCGAATGGAGACGCTATTTTCTTGAAGTTTGTACTACATGATTGGAGTGATGAACGCTGCTTGAAATTACTGAAGAACTGTTATAATGCTATTCCTGTTGACGGGAAGGTAATTGTTGTGGAGCAAGTCCTTCCAACAGTGCCCGAAAGTAGTACTTTGGTGAGGTGCACATGTCAAACTGATGTTCTTATGATGACTCAAAATCCAGGAGGGAAGGAGAGAAACGAACAAGAATTTCTGGAACTAGCAAGAAAATCAGGATTTAGTGGCATTAGATGTGCTTGTGATGTTAATGACTTTAAGGTTATGGAGTTCTTCAAGTAG 1131 0.4332 METHPKLNGVEAEQVPQRKGEPDPDAEAESFCYALQLVNSAALPMSLHTALELGVLDIIHKTGPGAKVSAKDIVAQIPTKNPDAATMIDRILMLLASHSVLDCSVAAEDDESGSFKRLYSLNSVSKYFVPSEDGVSLKPLMALLQDKIFIQSWSQLKGAILEGGIPFNRVHGMHAFEYPSIDLRYNQVFNAAMSNTTCLAAKNIVERYKGFEHINILVDVGGGLGTTISFIISKYPHIQGINFDLPHVIKEAPSHPGVKHEGGDMFESVPNGDAIFLKFVLHDWSDERCLKLLKNCYNAIPVDGKVIVVEQVLPTVPESSTLVRCTCQTDVLMMTQNPGGKERNEQEFLELARKSGFSGIRCACDVNDFKVMEFFK* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01711 376 Pfam O-methyltransferase domain 153 358 IPR001077 GO:0008171
Rops4g01711 376 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 133 365 IPR029063 -
Rops4g01711 376 FunFam Caffeic acid 3-O-methyltransferase 12 128 - -
Rops4g01711 376 SUPERFAMILY "Winged helix" DNA-binding domain 26 131 IPR036390 -
Rops4g01711 376 Gene3D Vaccinia Virus protein VP39 130 376 IPR029063 -
Rops4g01711 376 PANTHER O-METHYLTRANSFERASE 37 363 IPR016461 GO:0008168
Rops4g01711 376 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 35 376 IPR016461 GO:0008168
Rops4g01711 376 Pfam Dimerisation domain 45 96 IPR012967 GO:0046983
Rops4g01711 376 PIRSF O-mtase 13 376 IPR016461 GO:0008168
Rops4g01711 376 MobiDBLite consensus disorder prediction 1 25 - -
Rops4g01711 376 Gene3D - 14 128 IPR036388 -
Rops4g01711 376 FunFam Caffeic acid O-methyltransferase 129 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01711 Rops-Chr4 41083833 41088013 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01711 29 376 Monolignol Biosynthesis Gene Families AT5G54160 52.011 3.39e-134 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01711 K13066 - cave:132187356 485.337