Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01709 ATGGCTCATTCATTGGAAACCAATAACAGTGAAGTGAAACAGCTTAAACAACAAGAAGATGGCATCGTTTTTGCCATGAACATGATGTCTTCTACCGTGCTCCCACTGGCAGTTCGGTCAGCAGTTGAGCTGGGCATCTTCGACATCTTAGGCAAAGAAGGTGAAGGTGTGAAGCTGTCTGCAGAGGCCATTGCTGTTAAGATTGGATCAAAGAACCCAGAAGCACCCATAATGCTGGACCGTCTTCTGAGATTGTTGGCAAGTCATTCCATGTTATATTGTTCACTTGGTGAAGATCAACAAGGGCTTCCATCTCCTCAGAGACTCTATAGCCTCGCCCCTGCTTCCAAGTACTTTGTGACCGATGCTGATGGTGTCTCGTTCGGACCCACTTTGAACTTACTTGTGAACAAGGTCTTCTTGGAAAGCTGGACTGAGCTGAAAGGAGCAATCTTAGAAGGAGGTGTAGCATTCGACAGGGTTTATGGCATGCATGCATTTGAGTATCCGGCTATGGATCCCCAGTTCAACGATGTTTTCAACAAAGCTATGTTCAGCTTGACCAATATAGTTATGAAGAGGATTCTTGAAATCTATGAAGGTTTTGAGCACATCAACACATTGGTGGATGTTGGTGGTGGTTTAGGGATCAATCTCAAGTTGATCACTTCAAAATATCCTCATATTCATGGTGTTAATTTTGACTTGCCTCACGTCATAGAACACGCCCCTACTTATGCTGGTGTGACACAAGTTGGAGGAGATATGTTTGAAAGTGTTCCAAATGGAGACATAATTTTTATGAAGGGGATACTTCATGATTGGAGTGATGAACACTGCTTGAAGTTATTGAAGAATTGCCATAAGGCTATTCCTAATGATGGAAAAGTGATTGTTGTGGAATTAATTCTTCCCATTCTCCCTGAGAGTTCGACTATTGCCAAGACTGGTTTCCAAGGTGACCTTTTAATGATGACTCAACATCCTGGAGGGAAAGAGCGAACCCAAAATGAATTCATGGAATTGGCACTAGCATCTGGATTTAACAACATCAAACTTGTTTGTTGTGTCTCTGGTTTCTGGATTATGGAATTCTTCAAGTAA 1104 0.4239 MAHSLETNNSEVKQLKQQEDGIVFAMNMMSSTVLPLAVRSAVELGIFDILGKEGEGVKLSAEAIAVKIGSKNPEAPIMLDRLLRLLASHSMLYCSLGEDQQGLPSPQRLYSLAPASKYFVTDADGVSFGPTLNLLVNKVFLESWTELKGAILEGGVAFDRVYGMHAFEYPAMDPQFNDVFNKAMFSLTNIVMKRILEIYEGFEHINTLVDVGGGLGINLKLITSKYPHIHGVNFDLPHVIEHAPTYAGVTQVGGDMFESVPNGDIIFMKGILHDWSDEHCLKLLKNCHKAIPNDGKVIVVELILPILPESSTIAKTGFQGDLLMMTQHPGGKERTQNEFMELALASGFNNIKLVCCVSGFWIMEFFK* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01709 367 SUPERFAMILY "Winged helix" DNA-binding domain 18 122 IPR036390 -
Rops4g01709 367 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 125 365 IPR029063 -
Rops4g01709 367 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 26 367 IPR016461 GO:0008168
Rops4g01709 367 FunFam Caffeic acid O-methyltransferase 120 367 - -
Rops4g01709 367 FunFam Caffeic acid 3-O-methyltransferase 4 119 - -
Rops4g01709 367 Pfam Dimerisation domain 37 87 IPR012967 GO:0046983
Rops4g01709 367 Pfam O-methyltransferase domain 144 349 IPR001077 GO:0008171
Rops4g01709 367 PIRSF O-mtase 2 367 IPR016461 GO:0008168
Rops4g01709 367 Gene3D - 2 119 IPR036388 -
Rops4g01709 367 Gene3D Vaccinia Virus protein VP39 120 367 IPR029063 -
Rops4g01709 367 PANTHER O-METHYLTRANSFERASE 25 348 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01709 Rops-Chr4 41061672 41067126 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01709 1 367 Monolignol Biosynthesis Gene Families AT5G54160 50.409 6.06e-130 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01709 K13066 - gmx:100789402 575.859