Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01708 ATGATGGCTAAAGCAGAGCAAATATTCCACGTTGCAAATGTTGATCCAAAAGAAAAACAAAGCACCCAAATCGAAGAAAAAAGCTTCACCTACGCTATGCAACTGGTTAACTCTAGTGTGCTTTCAATGGCCATGAACTCAGCTATTGAGCTTGGCATTTTTGATATCATAGACAAAGCAGGTGTGAATGCCAAGCTTTCTGCCAAGGACATTGCAGCTCAGCTTTCGTGCAAGAATCCAGAGGCAGCCACAATGTTAGATCGTGTCCTCAAGCTTCTAGCAAGTCATTCAGTGATTGATTGCACCGTGGTTGATGATGAATAA 324 0.4228 MMAKAEQIFHVANVDPKEKQSTQIEEKSFTYAMQLVNSSVLSMAMNSAIELGIFDIIDKAGVNAKLSAKDIAAQLSCKNPEAATMLDRVLKLLASHSVIDCTVVDDE* 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01708 107 Gene3D - 10 107 IPR036388 -
Rops4g01708 107 SUPERFAMILY "Winged helix" DNA-binding domain 26 106 IPR036390 -
Rops4g01708 107 FunFam Caffeic acid 3-O-methyltransferase 12 107 - -
Rops4g01708 107 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 33 107 IPR016461 GO:0008168
Rops4g01708 107 PANTHER O-METHYLTRANSFERASE 32 99 IPR016461 GO:0008168
Rops4g01708 107 Pfam Dimerisation domain 43 94 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01708 Rops-Chr4 41031957 41032280 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01708 18 102 Monolignol Biosynthesis Gene Families AT5G54160 44.318 1.19e-17 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01708 K13066 - gmx:100788873 132.494