Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01706 ATGGCTCCTTCATTAGAAACCAACAATGGTGAAGCCAAACACCTTAAGCCAGAAGGATATGTCCAAGAAGAAGATGGCATTGTTTTTGCTACGAACATAATATCTTCCGTCGTGTTTCCACTGGCGGTTCGGACGGCAGTTGAGCTGGGAATCTTTGACATCTTAGGCAAAGCAGGTGAAGGTGTGATGCTGTCTGCAGAGGACATTGCTGTTAAGGTTGGATCAAAGAACCCAGATGCACCCACATTACTGGACCGTCTTATGAGGTTGTTGGCAAGTCACTCCATGTTATATTGTTCACTTGGTGAAGATCAACAAGGGCTTCCATCTCCTCAGAGGCTCTATAGCCTTGCCCCTGCATCCAAGTACTTTGTGACCGATGCTGATGGTGTCTCGTTCGGACCCACTTTGAACTTACCACTGGACAAGGTCTTCTTGGGAAGCTGGACTGAGCTGAAAGGAGCAATCTTGGAAGGAGGTGTAGCATTCGATAGAGTTTATGGCATGCATGCATTTGAGTATCCGGTTGTAGATCCTAGATTCAATGATGTTTTCAACAAAGCGATGTTGAGCTGTACCACCATAGTCATGAAGAGGGTTCTTGAGTTCTACAAAGGTTTTGAGCACATCAACAAATTGGTGGATGTTGGTGGTGGTCTTGGGATCAATCTCAAGCTGATCACTTCAAAATATCCTCATATCCAAGGTGTTAATTTTGACTTACCTCATGTCATAGAGCACGCCCCTACCTATGCCGGCGTGACACATGTGGGAGGGGATATGTTTGAGAGTGTTCCCAATGGAGATGCCATTTTTATGAAGTGGATACTTCACGATTGGAGTGATGAACACTGCTTGAAGTTGTTAAAGAATTGTCATAAAGCTATTCCTAATGATGGAAAAGTGATAGTTGTAGACTCAATTCTTCCCGTTCTACCAGAAAGTACTGTTATTGCCAAGACTGCTTTCCAAGCTGATCTCTTAATGATGACTCAAAACCCAGGAGGGAAAGAGCGAACCCAAAATGAATTCATGGAATTGGCATTAGGATCTGGATTTGGAGGCATAAAACTCCTATGCTGTATTTCTGGTTTCTGGGTTATGGAATTCTTCAAGTAG 1119 0.4379 MAPSLETNNGEAKHLKPEGYVQEEDGIVFATNIISSVVFPLAVRTAVELGIFDILGKAGEGVMLSAEDIAVKVGSKNPDAPTLLDRLMRLLASHSMLYCSLGEDQQGLPSPQRLYSLAPASKYFVTDADGVSFGPTLNLPLDKVFLGSWTELKGAILEGGVAFDRVYGMHAFEYPVVDPRFNDVFNKAMLSCTTIVMKRVLEFYKGFEHINKLVDVGGGLGINLKLITSKYPHIQGVNFDLPHVIEHAPTYAGVTHVGGDMFESVPNGDAIFMKWILHDWSDEHCLKLLKNCHKAIPNDGKVIVVDSILPVLPESTVIAKTAFQADLLMMTQNPGGKERTQNEFMELALGSGFGGIKLLCCISGFWVMEFFK* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01706 372 PIRSF O-mtase 8 372 IPR016461 GO:0008168
Rops4g01706 372 FunFam Caffeic acid 3-O-methyltransferase 8 124 - -
Rops4g01706 372 SUPERFAMILY "Winged helix" DNA-binding domain 23 127 IPR036390 -
Rops4g01706 372 Gene3D - 38 200 IPR036388 -
Rops4g01706 372 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 31 372 IPR016461 GO:0008168
Rops4g01706 372 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 130 370 IPR029063 -
Rops4g01706 372 Pfam Dimerisation domain 42 92 IPR012967 GO:0046983
Rops4g01706 372 FunFam Caffeic acid O-methyltransferase 125 372 - -
Rops4g01706 372 PANTHER O-METHYLTRANSFERASE 34 353 IPR016461 GO:0008168
Rops4g01706 372 Gene3D Vaccinia Virus protein VP39 182 361 IPR029063 -
Rops4g01706 372 Pfam O-methyltransferase domain 149 353 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01706 Rops-Chr4 41006430 41009941 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01706 21 372 Monolignol Biosynthesis Gene Families AT5G54160 50.852 3.15e-131 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01706 K13066 - gmx:100789402 596.66