Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01704 ATGGCTCATTCATCATTAGAAGAAACCAATAACAGTGAAGCAAAGAACCTCAAACAAGAACATGATGGCATCACTTTTGCCATGTACATGATGTCTTCTGCGGTGCTTCCACTGGCGGTTCGAACTGCAGTTGAGCTAGGAATCTTCGACATCTTAAGCAAAGCAGGTGAAGGTGTGAAGAAGCTCTCTACAGAGGACATTGCTGTTCAGATTGGGTCGAAGAACCCAGATGCACCCACAATGCTGGACCGTCTTTTGAGGTTGTTGGCTAGTCACTCCATGCTATATTGTTCACTTGGTGAAGATCAACAAGGCCTTGCATCTCCTCAAAGGCTCTATAGTCTCGCCCCTTTATCCAAGTACTTTGTGACTGATGCTGATGGTGTCTCATTTGGACCCACTCTGAACTTAGCTCTCGACAAGGTCTTCATGGAAAGCTGGACCGGTCTGAAAGGAGCAATCTTAGAAGGAGGTTTACCATTCAACAGGGTTCATGGCATGCATATATTTGAGTATGCAGGTTTGGATCCCAGGTTCAATGATACTTTCAACAAAGCTATGTTCAACAGTACCACTATAATAATGAATAGAATTCTTGAGTTTTACAAAGGTTTTGAGTGCATTAATAGACTGGTCGATGTTGGTGGTGGTCTTGGGATCAGTCTTAAGTTGATCACTTCAAAATATCCTCATATTCAGGGTGTTAATTTTGACTTACCTCACGTCGTAGAGCATGCCCCTACCTATGCTGGCATGATTCATGTGGGAGGAGATATGTTTGAGGGTGTTCCTGAAGGAGATGCCATTTTTATGAAGTGGATACTTCACGATTGGAACGATGAACACTGCTTGAAGTTGTTGAAGAATTGCCATAAAGCTATTCCTCATGATGGAAAAGTGATTGTTGTGGATGCAATTCTTCCCATTTTGCCTGAGAGTACAATTATTGCCAAGACTGATTCCCGTGCTGACCTCTTTATGATGACTCAAAACTCAGGAGGAAGAGAGCGAACCCAAAATGAATTCATGAAATTGGCTTTAGGATCTGGATTTAATGGCATCAAATTCGTTTATTGTGCCTCTAACTACTGGGTTATGGAGTTTTTCAAGTAG 1113 0.4232 MAHSSLEETNNSEAKNLKQEHDGITFAMYMMSSAVLPLAVRTAVELGIFDILSKAGEGVKKLSTEDIAVQIGSKNPDAPTMLDRLLRLLASHSMLYCSLGEDQQGLASPQRLYSLAPLSKYFVTDADGVSFGPTLNLALDKVFMESWTGLKGAILEGGLPFNRVHGMHIFEYAGLDPRFNDTFNKAMFNSTTIIMNRILEFYKGFECINRLVDVGGGLGISLKLITSKYPHIQGVNFDLPHVVEHAPTYAGMIHVGGDMFEGVPEGDAIFMKWILHDWNDEHCLKLLKNCHKAIPHDGKVIVVDAILPILPESTIIAKTDSRADLFMMTQNSGGRERTQNEFMKLALGSGFNGIKFVYCASNYWVMEFFK* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01704 370 PIRSF O-mtase 4 370 IPR016461 GO:0008168
Rops4g01704 370 Gene3D Vaccinia Virus protein VP39 123 370 IPR029063 -
Rops4g01704 370 Pfam Dimerisation domain 39 90 IPR012967 GO:0046983
Rops4g01704 370 PANTHER O-METHYLTRANSFERASE 27 356 IPR016461 GO:0008168
Rops4g01704 370 SUPERFAMILY "Winged helix" DNA-binding domain 20 125 IPR036390 -
Rops4g01704 370 Gene3D - 3 122 IPR036388 -
Rops4g01704 370 Pfam O-methyltransferase domain 147 352 IPR001077 GO:0008171
Rops4g01704 370 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 28 370 IPR016461 GO:0008168
Rops4g01704 370 FunFam Caffeic acid O-methyltransferase 123 370 - -
Rops4g01704 370 FunFam Caffeic acid 3-O-methyltransferase 4 122 - -
Rops4g01704 370 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 128 368 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01704 Rops-Chr4 40954082 40956715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01704 26 370 Monolignol Biosynthesis Gene Families AT5G54160 51.884 1.67e-130 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01704 K13066 - gmx:100789402 551.977