Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01702 ATGGAGAGGCTTCAAGGACCCCTCAATTCTTATTTCTTTGGGGACCATTTGGAAGTGAATTGTTTGGAGCAAGCTTTGGTTGATTCAGAAAGCTTGAGACTTGAAGATGAAAAACAACTTTTGATATCAAGTTTAGAGGATAACATGCCATTTTTGCAGATGCTTCAGAGTGTGGAATCCCCACAGTTTTTCCCTTTGAAAGAGCCAAGCTTTCAAACACTTCTGAGGCTGCAGCACTTGAAGAAACCATGGGAGGGGGTAGCCTATATTCCCAACATGGAGACTCAAGTTCAAGCAACATTGGAGCTAGAGAGTTGTGTGACACATGACATGTTGGAGATGCAGTCACCAGTGAAATCTGAAAGCTATGAACTTCAACACCCACGTTCAGTTTCATGTGTTGAGAAAGTGAGCTATGAGTGCAACCAGGAACCAACCAAAGTAGCACAATCATGCCCCAAATCTCAGCCAGTAGCAACAAAAGAAAAGAGAAAGCGAAAGAGAACAAGACCAACAAAGAACAAGGAAGATGTGGAGAACCAACGCATGACCCACATTGCTGTTGAACGAAACCGGAGACGCCAAATGAATGATCATCTCAGTGTTCTAAGGTCCCTCATGCCCTCTTCCTATATTCAAAGGGGTGACCAAGCATCAATCATTGGAGGTGCAATAGATTTTGTGAAGGAGTTGGAACAGTTGCTTCAATCCCTTGAAGCACAAAAAAGGATAAGAAAAAGTGAAGAGGTTGGTTCTTCTTCCATGAGGTTGTGTAAGCCATCATCATCATCACCTGGTTTTGGAATGAAGTCATCATCCACTGAAGAAGATGAGGTGAAGGCAGAAAGCAAGTCAGAGGTAGCGGACATAAAAGTCACCTTGATTCAAACCCATGTGAACTTGAAAATTGAGTGCCAAAGAAGACCCGGGCAATTGATAAAGGTAATTGTTGCTTTGGAGGACCTAAGGCTAACCATTCTGCACCTTAACATCACCTCATCCGAGGCTTCTGTCCTCTACTCCCTCAATCTCAAGATTGAAGAAGACTGCAAGCTAGGCTCAGCAAATGACATTGCAGAAGCTGTTCATCATATATTCAACTTTATTAACGGTAGCTATAGCCACTAG 1128 0.43 MERLQGPLNSYFFGDHLEVNCLEQALVDSESLRLEDEKQLLISSLEDNMPFLQMLQSVESPQFFPLKEPSFQTLLRLQHLKKPWEGVAYIPNMETQVQATLELESCVTHDMLEMQSPVKSESYELQHPRSVSCVEKVSYECNQEPTKVAQSCPKSQPVATKEKRKRKRTRPTKNKEDVENQRMTHIAVERNRRRQMNDHLSVLRSLMPSSYIQRGDQASIIGGAIDFVKELEQLLQSLEAQKRIRKSEEVGSSSMRLCKPSSSSPGFGMKSSSTEEDEVKAESKSEVADIKVTLIQTHVNLKIECQRRPGQLIKVIVALEDLRLTILHLNITSSEASVLYSLNLKIEEDCKLGSANDIAEAVHHIFNFINGSYSH* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01702 375 SMART finulus 186 237 IPR011598 GO:0046983
Rops4g01702 375 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 180 247 IPR036638 GO:0046983
Rops4g01702 375 MobiDBLite consensus disorder prediction 145 179 - -
Rops4g01702 375 Pfam Helix-loop-helix DNA-binding domain 181 232 IPR011598 GO:0046983
Rops4g01702 375 Coils Coil 228 248 - -
Rops4g01702 375 MobiDBLite consensus disorder prediction 251 282 - -
Rops4g01702 375 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 180 231 IPR011598 GO:0046983
Rops4g01702 375 FunFam Basic helix-loop-helix transcription factor 171 246 - -
Rops4g01702 375 CDD bHLH_AtFAMA_like 183 254 - -
Rops4g01702 375 PANTHER TRANSCRIPTION FACTOR FAMA 111 366 IPR044283 GO:0003700|GO:0010052
Rops4g01702 375 MobiDBLite consensus disorder prediction 254 271 - -
Rops4g01702 375 Gene3D - 170 257 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01702 Rops-Chr4 40917124 40920114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01702 34 371 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 44.898 2.26e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops4g01702 HLH 2.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01702 - - gmx:100789928 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01702 4 40917124 40920114 Rops4g01702 4 40917124 40920114 ECH