Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01698 ATGGATGAAGTGGTGGAGTTGAATGGAACGATGAAGGAGACAGAGGAGGAGCAACATAAGAAGAAGAAGAATGATGATGATGAAGGTGATAATGATCGCTCTACGGAAGAGGTGGTTCAGTGGGAGAAGTTTCTGCCACGAATGGTGCTGAGAGTGTTGCTTGTTGAATCTGATCATTCTACTCGTCAGATCATAACTGCACTTCTCAAAAAATGCGGTTACAGAGTTATTGCAGTTCCTGATGGATTAAAGGCGTGGGAGATGTTGAAGAGGAAGGCACCTGACCTAGATCTCATATTAACAGAAGTGGAATTGCCGGCAATATCTGGATTTGCACTTCTTTCTTTAATAATGGAGCATGACATTTGCAAAAACATTCCCGTTATAATGATGTCTTCTCACGATTCAGTTAACATGGTGTTGAAATGCATGTTAAAAGGTGCTGTTGATTTTCTTATCAAACCTGTTCGGAGGAATGAGCTTAGAAACCTGTGGCAGCATGTATGGAGAAGGCATGCTATTACCAGGCCTCCCCAAAATAATGATAAAAAACTTGAAACTGCCATAGAAGACAATTCTGCAAGCCATCAATCGAGTGGTTCCGTGGCTTCCCCACAGAAAAATAATGAAGGCAGTGAGAAATATAGCGAGGCTCAAAGCACATGTACATCGCCATTTTTGGAAGCTGAAAGTGCACACATGGAAAGTATGCAGAATGCATCCCAGCTGAAGAGTTCTTCGAAATTGAGCAACATTGATACGGTGAAGCATGAAGAGTTTACCAAATTCAAAAGGGAATCAACTAAGCATAATTATGAAACAGGAGAGAAATCAATTACATGTGCATCAGAGGCTGCAAGGTGCGACAAAACTGTTAAATTGACAGGTTTAAGGCTTGAACAAGGTCATGGTTCTGCTGAAATTGAAAACAAAGATGATAATTTTAGAACTGAGCTAAGCACAGGAAATCCTAATATTAATACCGAGATACATGGATGCAGTCATGAATTAGAACAGCCTTCTACAGGAGCTATTAAGTTAATTTCCACATATGAGAATCTTCCTAAGCACAGTAATGAAAACTGTTGTCTCGATGGTGGTAACATAACCAAGTTTGATTTTGATAGACAATTAGATCTTTCTTCGAGAAAAGATTTTGCTGCCAGCTCATATAAACAAGCAAGTGAAGCAGCTGAGGAATGGCAAAGATTGAATCATTCAAATACTTCTGCCTTTTCGTGGTATAATGGTAGTAAGCTGTGGCAGCCTCATTTTTCAACAACACAGAATGCATCTTCCAAAGTAAACAATGACAATTGGGATTCTCATGAATCGCATAAATTATCTGGAATTATTGCTGGAAATAATCTCTCAAATCAAAATCAAGAGAATATGACCACCACTAATGTCTTTACTTTGTTCCATGCACAAGCTGTTGTTCATCCGATATGGAATCCAAAACCAGTCTGCCAAAACGAGAGTTCTCCCTTTCCCTCGAGTACCTCCTCCCACTCCAATCCTGAAAGTCATAACTCAGATCAACATAATCATTGGTCTGATGATGCTAATTATACTTGTCTTAATCAAAATGTAAATGACAAAATCAATTTGGATCATGCAAGACATGATTGTCCTGTGGCTGGTAAGGGCGCTAATGATTTATGCCATGATGTTACAAATCAAATCAACAGTAGTGCGTATGGAAGTACAGACAGTGGAAAGGATGGAAATGCTACTTCAACTATGATAGCTAAGAACACACCTGAAAGTTTTAGTGATAGTGGTTACCATAATTATGATGGATTTCGTTTGATGGATTCTCATCGCTCTAGTCAAAGAGAAGCAGCTCTAACAAAGTTTCGACTAAAGCGAAAAGAGAGATGTTATGAGAAAAAGGTTCGATATCAAAGTCGGAAAAGACTAGCAGAGCAGCGTCCTCGGGTAAAAGGACAGTTTGTACGCCAAGTGCAAACTGTCCTTTCCCATGAGGATGCCAATCATCCAGTCACTGATACTGGTGGTGATTCTTGA 2031 0.3959 MDEVVELNGTMKETEEEQHKKKKNDDDEGDNDRSTEEVVQWEKFLPRMVLRVLLVESDHSTRQIITALLKKCGYRVIAVPDGLKAWEMLKRKAPDLDLILTEVELPAISGFALLSLIMEHDICKNIPVIMMSSHDSVNMVLKCMLKGAVDFLIKPVRRNELRNLWQHVWRRHAITRPPQNNDKKLETAIEDNSASHQSSGSVASPQKNNEGSEKYSEAQSTCTSPFLEAESAHMESMQNASQLKSSSKLSNIDTVKHEEFTKFKRESTKHNYETGEKSITCASEAARCDKTVKLTGLRLEQGHGSAEIENKDDNFRTELSTGNPNINTEIHGCSHELEQPSTGAIKLISTYENLPKHSNENCCLDGGNITKFDFDRQLDLSSRKDFAASSYKQASEAAEEWQRLNHSNTSAFSWYNGSKLWQPHFSTTQNASSKVNNDNWDSHESHKLSGIIAGNNLSNQNQENMTTTNVFTLFHAQAVVHPIWNPKPVCQNESSPFPSSTSSHSNPESHNSDQHNHWSDDANYTCLNQNVNDKINLDHARHDCPVAGKGANDLCHDVTNQINSSAYGSTDSGKDGNATSTMIAKNTPESFSDSGYHNYDGFRLMDSHRSSQREAALTKFRLKRKERCYEKKVRYQSRKRLAEQRPRVKGQFVRQVQTVLSHEDANHPVTDTGGDS* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01698 676 MobiDBLite consensus disorder prediction 566 586 - -
Rops4g01698 676 Pfam Response regulator receiver domain 52 163 IPR001789 GO:0000160
Rops4g01698 676 ProSiteProfiles CCT domain profile. 613 655 IPR010402 GO:0005515
Rops4g01698 676 Gene3D - 48 280 - -
Rops4g01698 676 MobiDBLite consensus disorder prediction 230 249 - -
Rops4g01698 676 MobiDBLite consensus disorder prediction 491 509 - -
Rops4g01698 676 MobiDBLite consensus disorder prediction 191 223 - -
Rops4g01698 676 Pfam CCT motif 613 655 IPR010402 GO:0005515
Rops4g01698 676 Coils Coil 4 24 - -
Rops4g01698 676 MobiDBLite consensus disorder prediction 491 517 - -
Rops4g01698 676 SMART REC_2 50 165 IPR001789 GO:0000160
Rops4g01698 676 MobiDBLite consensus disorder prediction 234 249 - -
Rops4g01698 676 ProSiteProfiles Response regulatory domain profile. 51 169 IPR001789 GO:0000160
Rops4g01698 676 PANTHER TWO-COMPONENT RESPONSE REGULATOR 50 400 IPR045279 GO:0009736
Rops4g01698 676 CDD psREC_PRR 52 155 - -
Rops4g01698 676 MobiDBLite consensus disorder prediction 190 223 - -
Rops4g01698 676 MobiDBLite consensus disorder prediction 1 35 - -
Rops4g01698 676 SUPERFAMILY CheY-like 50 193 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01698 Rops-Chr4 40882673 40887815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01698 598 658 Response Regulator Gene Family AT5G24470 73.016 2.44e-21 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Rops4g01698 Response_reg 1.2e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01698 K12130 - gmx:100791698 814.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01698 4 40882673 40887815 Rops4g01698 4 40882673 40887815 ECH