Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01697 ATGGCATTGCCTCTGCTACCTCCTCCTTCTTCGGTGCTGAGCTTGAAACACAAACCCCAAATTTCACCTTCAACTAAACGATTCGTTTCACATTTCGGCCATACAAGCTTGGTTCCAACACCTCTGAGGAAAGCTAGGCTTTGGGGTGTGGCGACAGTGGTTGCAGAAGGGATTAACGGAGAAGAATCTCTGGTCACACAAAAGGATGACGGTTTCGGGAATGATGATGAAGAAGAAGAAGAACGGCAGAATAGGAAGCTGGGAACACCGTGTGAATTGTATGTATGCAATATCCCTAGAAGCTGTGACGCTGCTCAATTACTTGATATGTTCAAACCTCATGGAACCATTCTATCTCTTCAGGTTTGCTACAATGCTGAGACTGGTGAAAGTAAAGGGTGTGGTTATGTCACAATGGGATCCATAAACTCAGCAAGAAATGCAATTGCTGCATTGGATGGATCAGATGTTGGGGGGCGTGAAATGCAGGTTAGATTTTCAGTTGAGATGAATCTTGGAAGGAGGAATCATAAGAAAATGTACTCTTCCCCCAAGAGAGTTATATACTATGAAGCTCCTCATAAGTTGTATGTGGGCAATCTTTTTAGGGCTGTTAGACCTGAGCAGTTAAGAGATCATTTTAGCAGATTTGGGAATGTGCTTAGTGCTAAAGTATTGCATGATCATAATAAACAAGGGAAAACCCGGGTGTATGCGGTTCTCTCCTTTCAATCAGAGGCAGAACGCAATGCAGCAATGTCTCTTAATAAAACAGAATTTTATGGTCGTGTACTAATAGTTAGAGAGGGAGTAGAGAAGTCTGAGCCTTAA 831 0.4284 MALPLLPPPSSVLSLKHKPQISPSTKRFVSHFGHTSLVPTPLRKARLWGVATVVAEGINGEESLVTQKDDGFGNDDEEEEERQNRKLGTPCELYVCNIPRSCDAAQLLDMFKPHGTILSLQVCYNAETGESKGCGYVTMGSINSARNAIAALDGSDVGGREMQVRFSVEMNLGRRNHKKMYSSPKRVIYYEAPHKLYVGNLFRAVRPEQLRDHFSRFGNVLSAKVLHDHNKQGKTRVYAVLSFQSEAERNAAMSLNKTEFYGRVLIVREGVEKSEP* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01697 276 PANTHER OS02G0815200 PROTEIN 39 268 - -
Rops4g01697 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 265 IPR000504 GO:0003723
Rops4g01697 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 162 IPR000504 GO:0003723
Rops4g01697 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 272 IPR000504 GO:0003723
Rops4g01697 276 SUPERFAMILY RNA-binding domain, RBD 189 273 IPR035979 GO:0003676
Rops4g01697 276 SUPERFAMILY RNA-binding domain, RBD 88 176 IPR035979 GO:0003676
Rops4g01697 276 SMART rrm1_1 92 165 IPR000504 GO:0003723
Rops4g01697 276 SMART rrm1_1 195 268 IPR000504 GO:0003723
Rops4g01697 276 Gene3D - 174 276 IPR012677 -
Rops4g01697 276 Gene3D - 57 173 IPR012677 -
Rops4g01697 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 169 IPR000504 GO:0003723
Rops4g01697 276 MobiDBLite consensus disorder prediction 64 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01697 Rops-Chr4 40874057 40876071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01697 93 275 Eukaryotic Initiation Factors Gene Family AT2G36660 32.065 9.87e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01697 - - vra:106780336 305.449