Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01693 ATGAATGAACGATCGTATACTACTTTGACCATGATGCTTGATTTCGTTAGGGGATCGGATCGTATTGGCATTTTGCAACAGCGCAGGGAAACCTTCTTCAATCTCGTTTCTTCAAGTGTGAAAATGTCGCTGGGAGAGGTTGCATGCAGCTACTCGCTCATGATCCTTCACGATGATAACATTGCCGTCACTAGTGAGAAGATCTCAACTTTGTTGAAAGCTGCAAATGTTGAAGTTGAAGCTTATTGGCCAAGCTTATTTGCTAAACTTGGTGAGAAGCGAAGCATTGGGGATTTGATATCGAGTGCCGTAGGAGGTGGGGCTCCTGTTGCTGTTTCAGCCCCAGCTGCTGCTACTATTGGTGGCAGTGCTGCCACTGCAGTTGCTCCTACTGTGGAGAAGAAGGAAGAACCCCAGGAAGAGAGTGATGATGATATGGGATTCAGTTTGTTTGATTAG 459 0.4597 MNERSYTTLTMMLDFVRGSDRIGILQQRRETFFNLVSSSVKMSLGEVACSYSLMILHDDNIAVTSEKISTLLKAANVEVEAYWPSLFAKLGEKRSIGDLISSAVGGGAPVAVSAPAAATIGGSAATAVAPTVEKKEEPQEESDDDMGFSLFD* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01693 152 MobiDBLite consensus disorder prediction 125 152 - -
Rops4g01693 152 MobiDBLite consensus disorder prediction 138 152 - -
Rops4g01693 152 CDD Ribosomal_P1 46 151 - -
Rops4g01693 152 Hamap 50S ribosomal protein L12 [rpl12]. 47 152 IPR027534 GO:0003735|GO:0005840|GO:0006414
Rops4g01693 152 FunFam 60S acidic ribosomal protein P1 42 105 - -
Rops4g01693 152 Pfam 60s Acidic ribosomal protein 63 151 - -
Rops4g01693 152 Gene3D - 42 105 IPR038716 -
Rops4g01693 152 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 42 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01693 Rops-Chr4 40844186 40847190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01693 42 152 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 50.000 3.02e-31 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01693 K02942 - dcr:108206176 135.576