Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01691 ATGGTGGGTGGTAACAACAATTTGAGGCAATACAATGATACAACTTCTACCAAAATCTTTGTTGGAGGGTTAGCTTGGGAGACTCAAAGGGACACAATGAGGAGGTATTTTGAACAGTTTGGAGAGATTTTGGAGGCTGTTGTTATCACAGACAAGAACACTGGGAAATCCAAGGGTTATGGTTTTGTCACATTCAAGGATCCAGAGGCAGCTATCAAAGCATGTCAGAATCCCTCACCCATAATTGATGGACGAAGGGCAAATTGTAATATTGCATCTATTGGTGCAAACAAGAATCGTCCACATACTCCTCAATCTGGAAGGTTTAGAACAACACCTGGTATGTTGGCTTCACCTGCTTATCATGGCCCTTCCTCTACATTTGTCCATCAAGTCACTGGGCAATACGCATTGCCTTATTCAACTTATGGCAGGAACACTGGATATCCACAAGACACAATGCACCCCACCATGAATTATTATGGTGTCTATGAAGGTCAACAATTATCAAGTTACTACCCCACCAATGGGGTATCTGGGCCAGTGGGATTGATCCATAATATTTACCCTTTCAGTGCTCAATATGCATACAATAGCCAGGCTCATGGTTATGGAGTTCAATATCCCCAAATGATGCAGTTTCCTTTGCTCCCTAGGCACTTTGGCTCAGCTGGGATCCTTGCATTTCCTTCTACAATGGCAATGCCAATTATTAGTGCAGTTACAACAACAGCAACTACAACAACAACAGAGGCCATAGCAACAGATGCAGATGCTTCACAAGCAGCTGGATCAACTTCTGAACAAGATTCTTAG 816 0.4289 MVGGNNNLRQYNDTTSTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGKSKGYGFVTFKDPEAAIKACQNPSPIIDGRRANCNIASIGANKNRPHTPQSGRFRTTPGMLASPAYHGPSSTFVHQVTGQYALPYSTYGRNTGYPQDTMHPTMNYYGVYEGQQLSSYYPTNGVSGPVGLIHNIYPFSAQYAYNSQAHGYGVQYPQMMQFPLLPRHFGSAGILAFPSTMAMPIISAVTTTATTTTTEAIATDADASQAAGSTSEQDS* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01691 271 Gene3D - 4 108 IPR012677 -
Rops4g01691 271 PANTHER BOULE-RELATED 10 215 - -
Rops4g01691 271 SMART rrm1_1 18 90 IPR000504 GO:0003723
Rops4g01691 271 CDD RRM_RBM24_RBM38_like 17 92 - -
Rops4g01691 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 94 IPR000504 GO:0003723
Rops4g01691 271 SUPERFAMILY RNA-binding domain, RBD 15 104 IPR035979 GO:0003676
Rops4g01691 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 77 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01691 Rops-Chr4 40842249 40843888 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01691 13 93 C2H2 Transcription Factor Family AT2G19380 41.975 1.24e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01691 - - gmx:100786226 408.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01691 4 40842249 40843888 Rops4g01691 4 40842249 40843888 ECH