Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01688 ATGCCAGAAAACATGAGTATATCTGTTAATGGACAATCTCAAGTCCCTCCTGGCTTCAGGTTTCATCCAACTGAAGAGGAGCTTCTGCAGTACTACTTGAGGAAGAAGGTCTCTTATGAGCAGATAGATCTTGATGTGATTCGTGATGTTGATCTCAACAAGCTTGAACCATGGGATATACAAGAGAAATGCAAAATAGGAACCACCCCACAAAATGACTGGTACTTCTTCAGCCACAAAGATAAGAAGTATCCCACAGGAACACGTACCAATCGTGCCACAGCTGCAGGGTTCTGGAAGGCCACTGGCCGTGACAAAGTGATATATAGCAACGGCAAGAGGATTGGAATGAGAAAAACTCTGGTTTTCTACAAAGGTCGAGCACCACATGGCCAAAAATCTGATTGGATCATGCATGAATATAGACTAGACGACAATAACACCAACGACACCAATATTGTGTCAAATGTAATGGGGGATGGTTCCCAAGAAGAAGGATGGGTGGTGTGCAGGATTTTCAAGAAGAAGAACCATCTCAAAACCCTAGACAGCCCTTTAAACTCTTCCATCTCTGGGGAGGGTAGAAGAAGCCATTTGTATGATGAGGGAGATTTAGAGCAAATGCTTCAACAAATGGGAAGGGGATGCAAGGAAGAGAATTATGAAGCCAATTACAATTATGGAAGGTTTGCAAGGCCTTTTGACACAGGTCTCAACAATGGTGGTGGCTACCATGACAGGTTCTTGAAACTTCCAAGTCTAGAGAGTCCAAAATCAACAAGCATGGAGAGCCAGCAAAACAACACTGAGAACAATGATAACAACAATAATGGGTACCATGCCATTATCCCAGTTGAGATGGCCACAGATAATGAAGGGTCATTCACAACCCACCACCAGGTGAGTGGTGGTGCTGACCCAAACATGGTTCATCCATTGGAAGCATCATCATCAATGGTGGTAGCATCAGGTGGCTCAGGTGGTGGTGGCCTAACCAATTGGGCAGCTTTGGATAGGCTGGTTGCTTCTCAACTGAATGGCCAAACAGAGGCTTCTAGGCAATTGGCATGCTTCAATGACCCCACCATGGGGTATTGCACTAGTGACCATGATCTACAACTTCCCACCCTTCGATCATCATCATCATCTTCATCAACATCAACACACACAAGGGCTGTTCCTGCTTCTTACATTAGTCCCTCACAGGACTTTACCAGTGAGATTGACCTTTGGAACTTTGCTCGATCCGCATCTTCCTTGTTGTCATCCTCTGAACCTCTTTGCCACGTGTCCAACACGTCAGTGTAG 1308 0.4518 MPENMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEQIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNNTNDTNIVSNVMGDGSQEEGWVVCRIFKKKNHLKTLDSPLNSSISGEGRRSHLYDEGDLEQMLQQMGRGCKEENYEANYNYGRFARPFDTGLNNGGGYHDRFLKLPSLESPKSTSMESQQNNTENNDNNNNGYHAIIPVEMATDNEGSFTTHHQVSGGADPNMVHPLEASSSMVVASGGSGGGGLTNWAALDRLVASQLNGQTEASRQLACFNDPTMGYCTSDHDLQLPTLRSSSSSSSTSTHTRAVPASYISPSQDFTSEIDLWNFARSASSLLSSSEPLCHVSNTSV* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01688 435 FunFam NAC domain-containing protein 24 179 - -
Rops4g01688 435 Gene3D NAC domain 24 180 IPR036093 GO:0003677|GO:0006355
Rops4g01688 435 MobiDBLite consensus disorder prediction 255 276 - -
Rops4g01688 435 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 267 - -
Rops4g01688 435 SUPERFAMILY NAC domain 9 175 IPR036093 GO:0003677|GO:0006355
Rops4g01688 435 ProSiteProfiles NAC domain profile. 15 175 IPR003441 GO:0003677|GO:0006355
Rops4g01688 435 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01688 Rops-Chr4 40761186 40763099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01688 1 434 NAC Transcription Factor Family AT2G46770 54.157 7.62e-141 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops4g01688 NAM 3.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01688 - - gmx:100793308 663.299